Releases: RIVM-bioinformatics/AmpliGone
Releases · RIVM-bioinformatics/AmpliGone
AmpliGone v0.4.2
Features
- allow the primer-search error rate to be set by the user (fddd94a)
AmpliGone v0.4.1
Bug Fixes
- don't report duplicate coordinates of same primer when ambiguity-primers are given (f5449e2)
- use Nonetypes instead of string "None" (f5449e2)
AmpliGone v0.4.0
Features
- find coordinates of primers with mismatches to reference (d6bf925)
Bug Fixes
- consistently remove reverse primers in end-to-end mode (0c4f621)
- Fix cutting too many bases (78bd9ea)
- Make number of iterations variable (62ac2d7)
Documentation
- update installation instructions and include primer-search changes (5fdc6fa)
AmpliGone v0.3.3
Bug Fixes
- solve preset-sampling crash when less than 3 input reads are provided (29d5624)
- solve reference before assignment error in end-to-mid mode (14c9d24)
AmpliGone v0.3.2
Bug Fixes
- report removed coordinates from all iterations (f726e9a)
AmpliGone v0.3.1
Bug Fixes
- Distinguish (mis)match and cut soft clips (d4132c1)
Performance Improvements
- Add minimap scoring to presets (11158e5)
AmpliGone v0.3.0
Features
- Use CIGAR strings to cut end-to-end (ebd2684)
Bug Fixes
Performance Improvements
- Improved (fastq)data loading speed (9d1ae23)
Documentation
- Fix comment in cut_read function (b920738)
- update docs to match new primer removal process (035be92)
- update readme (95ff984)
AmpliGone v0.2.3
Bug Fixes
- set correct exit code when
-to
flag is given (5a93ff0)
AmpliGone v0.2.2
Bug Fixes
- add missing primer-orientation keywords (41a84e6)
- exit cleanly when primers aren't found (#11) (e927591)
- Exit cleanly with empty input (#12) (35aae65)
Documentation
- update user-guide to include newly added flag (4d28ac1)