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Merge pull request #34 from RTIInternational/enum_pv_formula_bugfix
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cleaned up dynamic enums to correct ill-defined PV_FORMULA
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bfurner authored Dec 23, 2024
2 parents 0e4d9f1 + 465c96f commit b1a0446
Showing 1 changed file with 7 additions and 15 deletions.
22 changes: 7 additions & 15 deletions src/bdchm/schema/bdchm.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -1310,13 +1310,9 @@ classes:
multivalued: false
range: Organization
required: false
observations:
description: A set of one or more observations.
multivalued: true
inlined_as_list: true
range: Observation
required: false

slots:
- observations

Observation:
is_a: Entity
description: A data structure with key (observation_type) and value (value) attributes that represents a single observation, such as the hematocrit component of a complete blood count panel.
Expand Down Expand Up @@ -1440,6 +1436,10 @@ slots:
associated_participant:
range: Participant
description: A reference to the Participant that is associated with this record.
observations:
range: Observation
description: A set of one or more observations.
multivalued: true


enums:
Expand Down Expand Up @@ -1521,7 +1521,6 @@ enums:
include_self: false
relationship_types:
- rdfs:subClassOf
pv_formula: LABEL

VitalStatusEnum:
description: >-
Expand All @@ -1544,7 +1543,6 @@ enums:
include_self: false
relationship_types:
- rdfs:subClassOf
pv_formula: LABEL

VisitCategoryEnum:
description: >-
Expand Down Expand Up @@ -1839,7 +1837,6 @@ enums:
include_self: false
relationship_types:
- rdfs:subClassOf
pv_formula: LABEL

HpoPhenotypicAbnormalityEnum:
description: >-
Expand All @@ -1851,7 +1848,6 @@ enums:
include_self: false
relationship_types:
- rdfs:subClassOf
pv_formula: LABEL

ConditionConceptEnum:
description: >-
Expand Down Expand Up @@ -1906,7 +1902,6 @@ enums:
description: Procedure codes from OMOP.
reachable_from:
source_ontology: OMOP
pv_formula: LABEL

DrugExposureConceptEnum:
description: Drug codes from RxNorm.
Expand All @@ -1917,7 +1912,6 @@ enums:
- urn:oid:2.16.840.1.113883.6.88
reachable_from:
source_ontology: bioregistry:rxnorm
pv_formula: LABEL

DrugExposureProvenanceEnum:
description: Source of drug exposure record
Expand Down Expand Up @@ -2481,7 +2475,6 @@ enums:
- urn:oid:2.16.840.1.113883.6.96
reachable_from:
source_ontology: bioregistry:snomedct
pv_formula: LABEL

DeviceExposureProvenanceEnum:
description: Source of device exposure record
Expand Down Expand Up @@ -3182,4 +3175,3 @@ enums:
description: Standard units of measurement from the [Units of Measurement (UOM) ontology](https://units-of-measurement.org/). Units-of-measurement (UOM) provides URLs for Unified Code for Units of Measure (UCUM) codes, and mappings to a number of units ontologies and systems, in human- and machine-readable linked data formats.
reachable_from:
source_ontology: UOM
pv_formula: LABEL

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