This GitHub repo contains code related to
Growing DAGs: Optimization Functions for Signaling Pathway Reconstruction Tunc Basar Kose, Jiarong Li, and Anna Ritz
This paper will be presented at the Computational Network Biology workshop, which is part of ACM-BCB in Chicago, IL August 7, 2022.
The src/ directory contains code for generating growing DAGs and posting them to GraphSpace. The data/ directory contains interactomes and pathways (some of which may be output from SPRAS).