more figure updates #109
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| name: Python package | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: macos-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.12.3" # Specify the version of Python to use | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ hashFiles('environment.yml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-conda- | |
| - name: Install Miniconda | |
| shell: bash | |
| run: | | |
| wget https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O miniconda.sh | |
| bash miniconda.sh -b -p $HOME/miniconda | |
| source "$HOME/miniconda/etc/profile.d/conda.sh" | |
| conda config --set always_yes yes --set changeps1 no | |
| conda config --add pkgs_dirs ~/conda_pkgs_dir | |
| conda update -q conda | |
| - name: Add conda channels | |
| shell: bash | |
| run: | | |
| source "$HOME/miniconda/etc/profile.d/conda.sh" | |
| conda config --add channels conda-forge | |
| - name: Create and activate conda environment | |
| shell: bash | |
| run: | | |
| source "$HOME/miniconda/etc/profile.d/conda.sh" | |
| conda env create -f environment.yml | |
| conda activate protein-prediction | |
| env: | |
| CONDA_PKGS_DIRS: ~/conda_pkgs_dir | |
| - name: Check Python version | |
| shell: bash | |
| run: | | |
| source "$HOME/miniconda/etc/profile.d/conda.sh" | |
| conda activate protein-prediction | |
| python --version | |
| - name: Run tests | |
| shell: bash | |
| run: | | |
| source "$HOME/miniconda/etc/profile.d/conda.sh" | |
| conda activate protein-prediction | |
| pytest |