Update test_pytest.py #51
Workflow file for this run
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name: Python package | |
on: [push, pull_request] | |
jobs: | |
test: | |
runs-on: macos-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: "3.12.3" # Specify the version of Python to use | |
- name: Cache conda | |
uses: actions/cache@v2 | |
with: | |
path: ~/conda_pkgs_dir | |
key: ${{ runner.os }}-conda-${{ hashFiles('environment.yml') }} | |
restore-keys: | | |
${{ runner.os }}-conda- | |
- name: Install Miniconda | |
shell: bash | |
run: | | |
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O miniconda.sh | |
bash miniconda.sh -b -p $HOME/miniconda | |
source "$HOME/miniconda/etc/profile.d/conda.sh" | |
conda config --set always_yes yes --set changeps1 no | |
conda config --add pkgs_dirs ~/conda_pkgs_dir | |
conda update -q conda | |
- name: Add conda channels | |
shell: bash | |
run: | | |
source "$HOME/miniconda/etc/profile.d/conda.sh" | |
conda config --add channels conda-forge | |
- name: Create and activate conda environment | |
shell: bash | |
run: | | |
source "$HOME/miniconda/etc/profile.d/conda.sh" | |
conda env create -f environment.yml | |
conda activate protein-prediction | |
env: | |
CONDA_PKGS_DIRS: ~/conda_pkgs_dir | |
- name: Check Python version | |
shell: bash | |
run: | | |
source "$HOME/miniconda/etc/profile.d/conda.sh" | |
conda activate protein-prediction | |
python --version | |
- name: Run tests | |
shell: bash | |
run: | | |
source "$HOME/miniconda/etc/profile.d/conda.sh" | |
conda activate protein-prediction | |
pytest |