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Regulatory #18

Merged
merged 27 commits into from
Sep 9, 2024
Merged

Regulatory #18

merged 27 commits into from
Sep 9, 2024

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ctrlaltaf
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  • updated species networks
  • new sampling method
  • new final figure generation pipeline

todo:

  • update pytest

amnorman and others added 27 commits June 26, 2024 14:46
…hbors that returns how many go terms are annotated to each protein and in what frequency, a reverse_sample function that samples positives before negatives (and is not integrated into the main workflow yet), and a box_sample_subset function that facilitates creating samples using only proteins with a set range of annotated go terms.
…ated go terms the distribution in go_neighbors
…doc for what they do), also added protein only and progo only networks.
@ctrlaltaf ctrlaltaf merged commit f6ddffc into main Sep 9, 2024
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