Synthetic data benchmarking pipeline

[ctrlaltaf]

Snakemake workflow that is able to take in spras edge file outputs and synthetic pathway data edge file for benchmarking.

Features:

• Config file to select which methods and pathways to process
• Sample test data to showcase how the pipeline works
• Generate network image representations of the spras and synthetic pathways
• Generate statistics file, including Jaccard index for node and edge similarity
• Generate ROC/PR curves for edge/node for both pathway specific and method specific comparisons
• Generate heatmap to compare jaccard index for node and edge similarity across methods and pathways

Todo:

• Think about how to handle directionality
• How to handle weights/prizes