Merge pull request #25 from inab/wfexs

Added terms to model ContentWithURIs concept

wfexs/context.json

@@ -4,7 +4,12 @@
         {
             "syntheticOutput": "https://w3id.org/ro/terms/wfexs#syntheticOutput",
             "globPattern": "https://w3id.org/ro/terms/wfexs#globPattern",
-            "filledFrom": "https://w3id.org/ro/terms/wfexs#filledFrom"
+            "filledFrom": "https://w3id.org/ro/terms/wfexs#filledFrom",
+            "contentWithURIs": "https://w3id.org/ro/terms/wfexs#contentWithURIs",
+            "headerRows": "https://w3id.org/ro/terms/wfexs#headerRows",
+            "rowSep": "https://w3id.org/ro/terms/wfexs#rowSep",
+            "columnSep": "https://w3id.org/ro/terms/wfexs#columnSep",
+            "uriColumns": "https://w3id.org/ro/terms/wfexs#uriColumns"
         }
     ]
 }

wfexs/context.jsonld

@@ -4,7 +4,12 @@
         {
             "syntheticOutput": "https://w3id.org/ro/terms/wfexs#syntheticOutput",
             "globPattern": "https://w3id.org/ro/terms/wfexs#globPattern",
-            "filledFrom": "https://w3id.org/ro/terms/wfexs#filledFrom"
+            "filledFrom": "https://w3id.org/ro/terms/wfexs#filledFrom",
+            "contentWithURIs": "https://w3id.org/ro/terms/wfexs#contentWithURIs",
+            "headerRows": "https://w3id.org/ro/terms/wfexs#headerRows",
+            "rowSep": "https://w3id.org/ro/terms/wfexs#rowSep",
+            "columnSep": "https://w3id.org/ro/terms/wfexs#columnSep",
+            "uriColumns": "https://w3id.org/ro/terms/wfexs#uriColumns"
         }
     ]
 }

wfexs/vocabulary.csv

@@ -1,4 +1,9 @@
 term,type,label,description,domain,range
 syntheticOutput,Property,"synthetic output","Is the related output File, Dataset or Collection 'synthetic'? (i.e. obtained using a glob pattern from other output)","FormalParameter","Boolean"
 globPattern,Property,"glob pattern","Glob pattern used to select the components of this 'synthetic' output File, Dataset or Collection","FormalParameter","Text"
-filledFrom, Property,"filled from","The path of this output was either setup through this parameter, or it is (partially) fed from another output","FormalParameter","Text"
+filledFrom,Property,"filled from","The path of this output was either setup through this parameter, or it is (partially) fed from another output","FormalParameter","Text"
+contentWithURIs,Property,"content with URIs","Does the contents of this input contain URIs to be fetched? It is very common in nf-core workflows where a tabular file works as a sort of BOM (bill of materials)","FormalParameter","Boolean"
+headerRows,Property,"number of header rows","If encodingFormat is text/csv, the number of header rows to skip before processing the content","FormalParameter","Integer"
+rowSep,Property,"row separator","If encodingFormat is text/csv, the string used to split the content in lines. By default it is the new line","FormalParameter","Text"
+columnSep,Property,"column separator","If encodingFormat is text/csv, the regular expression used to split the tabulated content by columns","FormalParameter","Text"
+uriColumns,Property,"column numbers with URIs","If encodingFormat is text/csv, the zero-based number of the columns having URIs","FormalParameter","Integer"