Merge pull request #16 from RobokopU24/update/4-17-24-content-update

4-17-24 content update
RobokopU24 · Apr 17, 2024 · 4d0ab85 · 4d0ab85
2 parents 9ae0dea + e1dc735
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diff --git a/api/openapi.json b/api/openapi.json
diff --git a/docs/automat/alliance-of-genome-resources.tag.mdx b/docs/automat/alliance-of-genome-resources.tag.mdx
@@ -10,15 +10,16 @@ custom_edit_url: null
 
 The Alliance of Genome Resources is a consortium of the owners of seven model organism databases (MODs) and the Gene Ontology (GO) Consortium, whose goal is to provide an integrated view of their data to all biologists, clinicians, and other interested parties. The Alliance provides the results of all methods that have been benchmarked by the Quest for Orthologs Consortium (QfO), as well as curated ortholog inferences from HGNC (human, mouse, rat genes).
 
-**Version:** f713443719161796
+**Version:** 52b222baedc80328
 
 **URL:** [https://www.alliancegenome.org/](https://www.alliancegenome.org/)
 
-**Files:** [https://stars.renci.org/var/plater/bl-3.5.4/GenomeAllianceOrthologs_Automat/f713443719161796](https://stars.renci.org/var/plater/bl-3.5.4/GenomeAllianceOrthologs_Automat/f713443719161796)
+**Files:** [https://stars.renci.org/var/plater/bl-3.5.4/GenomeAllianceOrthologs_Automat/52b222baedc80328](https://stars.renci.org/var/plater/bl-3.5.4/GenomeAllianceOrthologs_Automat/52b222baedc80328)
 
-**Nodes:** 94,350
+**Nodes:** 94,336
+
+**Edges:** 530,374
 
-**Edges:** 530,499
 
 
 

diff --git a/docs/automat/automat.info.mdx b/docs/automat/automat.info.mdx
diff --git a/docs/automat/binding.tag.mdx b/docs/automat/binding.tag.mdx
@@ -10,15 +10,16 @@ custom_edit_url: null
 
 Binding DataBase (BindingDB) openly exposes curated data on chemical entities and their molecular targets.
 
-**Version:** 6ff4faf347a97f7f
+**Version:** 711f33bcebbef313
 
 **URL:** [https://www.bindingdb.org/](https://www.bindingdb.org/)
 
-**Files:** [https://stars.renci.org/var/plater/bl-3.5.4/BINDING_Automat/6ff4faf347a97f7f](https://stars.renci.org/var/plater/bl-3.5.4/BINDING_Automat/6ff4faf347a97f7f)
+**Files:** [https://stars.renci.org/var/plater/bl-3.5.4/BINDING_Automat/711f33bcebbef313](https://stars.renci.org/var/plater/bl-3.5.4/BINDING_Automat/711f33bcebbef313)
 
-**Nodes:** 998,906
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+**Edges:** 2,168,353
 
-**Edges:** 2,016,461
 
 
 

diff --git a/docs/automat/cam-kg.tag.mdx b/docs/automat/cam-kg.tag.mdx
@@ -0,0 +1,40 @@
+---
+id: cam-kg
+title: "CAM KG"
+description: "CAM KG"
+custom_edit_url: null
+---
+
+
+
+
+The CAM KG contains data on CAMs (Causal Activity Models), which are small knowledge graphs built using the Web Ontology Language (OWL). The CAM database combines many CAM graphs, along with a large merged bio-ontology containing the full vocabulary of concepts referenced within the individual CAMs. Each CAM describes an instantiation of some of those concepts in a particular context, modeling the interactions between those instances as an interlinked representation of a complex biological or environmental process.
+
+**Version:** e553a5174c60a698
+
+
+
+**Files:** [https://stars.renci.org/var/plater/bl-3.5.4/CAMKP_Automat/e553a5174c60a698](https://stars.renci.org/var/plater/bl-3.5.4/CAMKP_Automat/e553a5174c60a698)
+
+**Nodes:** 119,464
+
+**Edges:** 2,199,905
+
+
+
+
+
+
+## Query Endpoints
+```mdx-code-block
+import DocCardList from '@theme/DocCardList';
+import {useCurrentSidebarCategory} from '@docusaurus/theme-common';
+
+<DocCardList items={useCurrentSidebarCategory().items.slice(0, 6)}/>
+```
+
+## Metadata Endpoints    
+```mdx-code-block
+<DocCardList items={useCurrentSidebarCategory().items.slice(6)}/>
+```
+
diff --git a/docs/automat/cam-provider-kg.tag.mdx b/docs/automat/cam-provider-kg.tag.mdx
diff --git a/docs/automat/ctd.tag.mdx b/docs/automat/ctd.tag.mdx
@@ -10,15 +10,16 @@ custom_edit_url: null
 
 The Comparative Toxicogenomics Database (CTD) is an open-source database that provides manually curated information about chemical-gene/protein, chemical-disease, and gene/protein-disease relationships, with additional support for the curated relationships provided by function and pathway data.
 
-**Version:** 20d3dfad16037510
+**Version:** c471321e4404efde
 
 **URL:** [http://ctdbase.org/about/](http://ctdbase.org/about/)
 
-**Files:** [https://stars.renci.org/var/plater/bl-3.5.4/CTD_Automat/20d3dfad16037510](https://stars.renci.org/var/plater/bl-3.5.4/CTD_Automat/20d3dfad16037510)
+**Files:** [https://stars.renci.org/var/plater/bl-3.5.4/CTD_Automat/c471321e4404efde](https://stars.renci.org/var/plater/bl-3.5.4/CTD_Automat/c471321e4404efde)
 
-**Nodes:** 444,472
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+
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diff --git a/docs/automat/cypher-cypher-post-cam-kp.api.mdx b/docs/automat/cypher-cypher-post-cam-kp.api.mdx
@@ -5,7 +5,7 @@ description: "Runs cypher query against the Neo4j instance, and returns an equiv
 sidebar_label: "Run cypher query"
 hide_title: true
 hide_table_of_contents: true
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+api: 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
 sidebar_class_name: "post api-method"
 info_path: docs/automat/automat
 custom_edit_url: null

diff --git a/...utomat/cypher-cypher-post-biolink.api.mdx → ...mat/cypher-cypher-post-monarch-kg.api.mdx b/...utomat/cypher-cypher-post-biolink.api.mdx → ...mat/cypher-cypher-post-monarch-kg.api.mdx
@@ -1,11 +1,11 @@
 ---
-id: cypher-cypher-post-biolink
+id: cypher-cypher-post-monarch-kg
 title: "Run cypher query"
 description: "Runs cypher query against the Neo4j instance, and returns an equivalent response expected from a Neo4j HTTP endpoint (https://neo4j.com/docs/rest-docs/current/)."
 sidebar_label: "Run cypher query"
 hide_title: true
 hide_table_of_contents: true
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+api: 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
 sidebar_class_name: "post api-method"
 info_path: docs/automat/automat
 custom_edit_url: null
@@ -24,7 +24,7 @@ import TabItem from "@theme/TabItem";
 
 <h1 className={"openapi__heading"}>Run cypher query</h1>
 
-<MethodEndpoint method={"post"} path={"/biolink/cypher"}></MethodEndpoint>
+<MethodEndpoint method={"post"} path={"/monarch-kg/cypher"}></MethodEndpoint>