Update for TRAPI 1.4 deployments

RobokopU24 · Oct 18, 2023 · e8dfa41 · e8dfa41
1 parent d9e6933
commit e8dfa41
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Showing 2 changed files with 17 additions and 5 deletions.
diff --git a/scripts/preprocess.js b/scripts/preprocess.js
@@ -5,7 +5,7 @@
 const fs = require("fs");
 const { v4 } = require("uuid");
 
-const BASE_URL = "https://automat-u24.apps.renci.org";
+const BASE_URL = "https://robokop-automat.apps.renci.org";
 const AUTOMAT_OPENAPI_URL = `${BASE_URL}/openapi.yml`;
 const OPENAPI_PATH = "./api/openapi.json";
 
@@ -30,6 +30,7 @@ async function fetchSpec() {
 async function writeSourceMetadata(jsonData) {
   const SOURCES = [
     "biolink",
+    "binding-db",
     "cam-kp",
     "ctd",
     "drugcentral",
@@ -45,6 +46,7 @@ async function writeSourceMetadata(jsonData) {
     "intact",
     "panther",
     "pharos",
+    "reactome",
     "robokopkg",
     "sri-reference-kg",
     "string-db",
@@ -108,11 +110,17 @@ async function writeSourceMetadata(jsonData) {
                 final_edge_count,
               } = tagMd;
 
+              // split the neo4j_dump url on '/' to get the containing directory and link to that instead
+              const fileDirLink = neo4j_dump
+                ?.split("/")
+                ?.slice(0, -1)
+                ?.join("/");
+
               tag.description = `
 ${graph_description ?? ""}\n
 ${graph_version ? `**Version:** ${graph_version}` : ""}\n
 ${graph_url ? `**URL:** [${graph_url}](${graph_url})` : ""}\n
-${neo4j_dump ? `**Neo4J:** [${neo4j_dump}](${neo4j_dump})` : ""}\n
+${fileDirLink ? `**Files:** [${fileDirLink}](${fileDirLink})` : ""}\n
 ${
   final_node_count
     ? `**Nodes:** ${parseInt(final_node_count).toLocaleString()}`

diff --git a/src/theme/DocCard/index.js b/src/theme/DocCard/index.js
@@ -43,10 +43,11 @@ function CardLayout({ href, icon, title, description, info }) {
 
 const SOURCES = new Map([
   ["RENCI SRI Reference KG", "biolink"],
-  ["CAM KP", "cam-kp"],
+  ["BINDING", "binding-db"],
+  ["CAM Provider KG", "cam-kp"],
   ["CTD", "ctd"],
   ["DrugCentral", "drugcentral"],
-  ["Alliance of Genome Resources Orthology", "genome-alliance"],
+  ["Alliance of Genome Resources", "genome-alliance"],
   ["GTEx", "gtex"],
   ["GtoPdb", "gtopdb"],
   ["GWAS Catalog", "gwas-catalog"],
@@ -58,6 +59,7 @@ const SOURCES = new Map([
   ["IntAct Molecular Interaction Database", "intact"],
   ["PANTHER", "panther"],
   ["Pharos", "pharos"],
+  ["Reactome", "reactome"],
   ["ROBOKOP KG", "robokopkg"],
   ["SRI Reference KG", "sri-reference-kg"],
   ["STRING", "string-db"],
@@ -73,7 +75,7 @@ const getMetaData = async (label) => {
 
   try {
     const response = await fetch(
-      `https://automat-u24.apps.renci.org/${SOURCES.get(label)}/metadata`,
+      `https://robokop-automat.apps.renci.org/${SOURCES.get(label)}/metadata`,
       {
         method: "GET",
         headers: {
@@ -106,6 +108,8 @@ function CardCategory({ item }) {
     })();
   }, []);
 
+  console.log(item);
+
   if (!href) {
     return null;
   }