This repository contains the code and files to reproduce the analyses presented in our paper: Luo, S., Germain, PL., Robinson, M.D. et al. Benchmarking computational methods for single-cell chromatin data analysis. Genome Biol 25, 225 (2024). https://doi.org/10.1186/s13059-024-03356-x
For downloading and processing all the datasets we used in our benchmark, see ./data.
For generating the visualizations in our benchmark paper, see ./analysis and ./result_files.
For the reusable snakemake pipeline, see the repository: sc_chromatin_benchmark.
