Roth Lab
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pyclone-vi
pyclone-vi PublicFast method for inferring cancer clonal population structure from SNV data.
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SpatialSort
SpatialSort PublicA spatially aware Bayesian clustering approach that allows for the incorporation of prior biological knowledge.
Repositories
- pgsm Public
Roth-Lab/pgsm’s past year of commit activity - PhyClone-Workflow Public
Snakemake workflow that runs PyClone-VI clustering and then PhyClone phylogenetic reconstruction.
Roth-Lab/PhyClone-Workflow’s past year of commit activity - ESQmodel Public
A biologically informed evaluation of 2-D cell segmentation quality in multiplexed tissue images.
Roth-Lab/ESQmodel’s past year of commit activity - single_cell_FL Public
Roth-Lab/single_cell_FL’s past year of commit activity - scg Public
Software for inference of clonal genotypes using targeted single cell (nucleus) sequencing.
Roth-Lab/scg’s past year of commit activity - SpatialSort Public
A spatially aware Bayesian clustering approach that allows for the incorporation of prior biological knowledge.
Roth-Lab/SpatialSort’s past year of commit activity - Roth-Lab.github.io Public
Roth-Lab/Roth-Lab.github.io’s past year of commit activity
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