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Breaking changes with PCU #433

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Commits on Mar 28, 2023

  1. Add state to PCU mpi interface. 

    This commit adds a MPI state that's separate from the global variables
to the internal pcu_mpi interfaces. The user level PCU interface remains
unchanged. However, this change lays the groundwork for PCU2 that will
not make use of global state. This is important for some use cases like
working around the spectrum-mpi comm_dup bug. The removal of global
state also improves testability and modularity of this code.
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  2. Compile on gcc+fix bug

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Commits on Mar 29, 2023

  1. remove virtual function table for pcu_mpi 

    Throughout the code base it was assumed that the mpi functions were
implemented through pmpi and so no other implementation really could
have been implemented. This change just removes the complexity
from having the vtable.
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  2. Put PCU state data into a structure

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  3. Use consistent initialization functions for MPI. 

    This commit allows the pcu_mpi to be initialized into a stack variable
rather than allways allocating on the heap.
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  4. Add PCU2 interface that takes the PCU state struct

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  5. add PCU2.h to install files

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  6. fix compiler warnings

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Commits on Mar 30, 2023

  1. constify mpi functions

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  2. first pass of PCU with making use of a high level object

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  3. remove unused functions

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  4. Fix gcc compilation

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Commits on Mar 31, 2023

  1. fix bug

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  2. remove unnecessary whitespace

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  3. bump version

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Commits on Jan 11, 2024

  1. Add state to PCU mpi interface. 

    This commit adds a MPI state that's separate from the global variables
to the internal pcu_mpi interfaces. The user level PCU interface remains
unchanged. However, this change lays the groundwork for PCU2 that will
not make use of global state. This is important for some use cases like
working around the spectrum-mpi comm_dup bug. The removal of global
state also improves testability and modularity of this code.
    @jacobmerson @flagdanger
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  2. Compile on gcc+fix bug

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  3. remove virtual function table for pcu_mpi 

    Throughout the code base it was assumed that the mpi functions were
implemented through pmpi and so no other implementation really could
have been implemented. This change just removes the complexity
from having the vtable.
    @jacobmerson @flagdanger
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  4. Put PCU state data into a structure

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  5. Use consistent initialization functions for MPI. 

    This commit allows the pcu_mpi to be initialized into a stack variable
rather than allways allocating on the heap.
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  6. Add PCU2 interface that takes the PCU state struct

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  7. add PCU2.h to install files

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  8. fix compiler warnings

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  9. constify mpi functions

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  10. first pass of PCU with making use of a high level object

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  11. remove unused functions

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  12. Fix gcc compilation

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  13. fix bug

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  14. remove unnecessary whitespace

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  15. bump version

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  16. Merge pull request #1 from flagdanger/pcu-object 

    Pcu object rebase
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  17. added pcu_ as a variable of Mesh

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  18. Added getPCU(), and beginning to change pcu functions

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Commits on Jan 16, 2024

  1. Can access global_pcu and some editing of function calls in /apf

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  2. Changed functions in more files up to folder ma

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Commits on Jan 17, 2024

  1. More PCU changes

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Commits on Jan 23, 2024

  1. More fixing

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Commits on Jan 24, 2024

  1. ph and pumi changes

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Commits on Jan 25, 2024

  1. more cleaning

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  2. test folder fixes

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  3. More test folder fixes

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Commits on Jan 26, 2024

  1. fixed last of test folder and made PCU2 .h and .cc

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Commits on Jan 30, 2024

  1. Re-checked apf and pcu2 fix

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  2. re-checking up to ma

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  3. ma folder redo

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Commits on Feb 5, 2024

  1. more fixes

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  2. Making new versions of functions to handle PCUHandle

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Commits on Feb 7, 2024

  1. phCook changes, changed phInput openfile_read to take PCUHandle, and … 

    …it brings up issues
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Commits on Feb 8, 2024

  1. Reverting phasta changes

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Commits on Feb 9, 2024

  1. mds folder changed to use PCU2

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Commits on Feb 12, 2024

  1. Last mds fixes (apfMDS.cc still has some issues)

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  2. Getting rid of include PCU.h in spots I missed

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  3. All parma changes I can do (lots of files need some workaround)

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  4. small pcu change

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  5. pcu_getglobal changes

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  6. apfCap fix

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  7. crv fixes

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  8. dsp pcu fix

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  9. gmi cap and sim pcu fixes

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  10. ma pcu fixes

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  11. changing apfMDS.cc back to original, still needs work

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  12. pumi pcu fixes

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  13. spr pcu fix

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  14. stk pcu fixes

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  15. changing repartition.cc back to original, still needs work

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Commits on Feb 14, 2024

  1. zoltan pcu fixes

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Commits on Mar 11, 2024

  1. pumi interface fixes, replacing old PCU uses

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  2. files in test folder changed to use new pumi - pcu interface

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Commits on Mar 12, 2024

  1. made default PCU arguments for Mesh functions and fixed old pcu issue… 

    …s, there are still some duplicate functions: loadMdsMesh, repeat, and expand that can be removed or made to take a default argument
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  2. repartition test file rebuilt to use new pcu

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Commits on Mar 14, 2024

  1. apf folder using new pcu except apfNumbering.cc

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Commits on Mar 15, 2024

  1. ma folder changed to use new pcu, changed some uses of print() in crv… 

    … folder
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Commits on Mar 18, 2024

  1. ma folder using new pcu, all tests passing

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Commits on Mar 20, 2024

  1. changed phastaio_initStats to not check if PCU is intitialized. Also … 

    …using PCUHandle and PCU2 in phiotimer.h
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Commits on Mar 25, 2024

  1. Phasta folder changed to use new PCU, passes tests.

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  2. small touchups in test files, apfMDS.cc, and apf_sim

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  3. Parma folder fixes, only thing not changed is parma_group.cc, all tes… 

    …ts pass. Making a new branch from here testing two different methods of fixing parma_group
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Commits on Mar 27, 2024

  1. added switchPCU to apfMesh to use in parma_group.cc

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Commits on Mar 28, 2024

  1. parma_group.cc fixed to use switchPCU, may need to change later

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  2. parallelReduce function fix

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Commits on Apr 1, 2024

  1. crv corrected makeEmptyMdsMesh use

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  2. ma corrected makeEmptyMdsMesh use

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  3. fixed BoxBuilder class and loadMdsFromANSYS to take an optional PCUObj

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  4. got rid of undef PCU_FORMAT_ATTRIBUTE, fixed compilation errors that … 

    …would come up
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  5. phasta - fixed createMdsMesh use

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  6. got rid of an #include PCU.h

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  7. #include PCU.h deletion

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  8. spr folder fixes

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  9. 1d test file

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  10. align test file

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  11. aniso_ma_test file

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  12. ansys test file

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  13. assert_timing test file

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  14. balance test file

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  15. bezierElevation test file

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  16. box test file

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  17. collapse test file

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  18. poisson test file

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Commits on Apr 9, 2024

  1. mdsCGNS PCUHandle fix

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  2. maximal independent set fixes

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  3. Parma_GroupCode run() function default changed to take a PCUObj

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  4. Test files fixed

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Commits on Apr 17, 2024

  1. loadMdsPart take optional PCU

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  2. loadMdsFromGmsh to take PCU

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  3. fixed runInGroups() to work with new PCU

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  4. reverted the run function in GroupCode structs to not take a PCU

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    flagdanger committed Apr 17, 2024
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  5. test files fixed to use PCUObj; all pass

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    flagdanger committed Apr 17, 2024
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Commits on Apr 26, 2024

  1. Mesh interface fixes

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    flagdanger committed Apr 26, 2024
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  2. Test files changed to use new PCU

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    flagdanger committed Apr 26, 2024
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Commits on Apr 29, 2024

  1. Added comments for uses of switchPCU

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    flagdanger committed Apr 29, 2024
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  2. added back reeResidualFunctionals.cc

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    flagdanger committed Apr 29, 2024
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  3. Delete config.sh

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    flagdanger authored Apr 29, 2024
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  4. Merge pull request #2 from flagdanger/pcu-object 

    pcu-object changes
    @jacobmerson
    jacobmerson authored Apr 29, 2024
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  5. Merge branch 'develop' into pcu-object

    @jacobmerson
    jacobmerson authored Apr 29, 2024
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  6. Warning fixes

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    flagdanger committed Apr 29, 2024
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  7. Merge branch 'pcu-object' of https://github.com/flagdanger/core into … 

    …pcu-object

Merging pcu-object
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Commits on Apr 30, 2024

  1. Merge pull request #3 from flagdanger/pcu-object 

    pcu-object fixed warnings
    @jacobmerson
    jacobmerson authored Apr 30, 2024
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Commits on May 2, 2024

  1. compiler errors with phLinks.cc fixed

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    flagdanger committed May 2, 2024
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Commits on May 6, 2024

  1. .github fix

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    flagdanger committed May 6, 2024
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  2. describe.cc getPeak() and getChunks() removed

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    flagdanger committed May 6, 2024
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Commits on Jun 3, 2024

  1. removed last uses of old pcu, removed pcu.cc and .h, got rid of defau… 

    …lt nullptr PCUObj arguments
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    flagdanger committed Jun 3, 2024
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Commits on Jul 1, 2024

  1. small fixes

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    flagdanger committed Jul 1, 2024
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Commits on Jul 5, 2024

  1. PCU2 using PCU naming, changed PCUHandle to PCU_t

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    flagdanger committed Jul 5, 2024
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Commits on Jul 9, 2024

  1. pumi_sys functions using pumi::instance to access PCU, added setPCU a… 

    …nd getPCU functions to pumi::instance()
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    flagdanger committed Jul 9, 2024
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  2. added pumi_load_pcu to replace the use of setPCU, removed PCUObj as a… 

    …n argument for pumi mesh creators
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    flagdanger committed Jul 9, 2024
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Commits on Jul 31, 2024

  1. apfSim typo fix

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    flagdanger committed Jul 31, 2024
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  2. pumi_rank() replacements

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    flagdanger committed Jul 31, 2024
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Commits on Aug 6, 2024

  1. simmetrix create mesh typo fixed

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    flagdanger committed Aug 6, 2024
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  2. Merge remote-tracking branch 'SCOREC/develop' into pcu-object-breaking

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    flagdanger committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. phLinks ptr issue fix

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    flagdanger committed Aug 7, 2024
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  2. phasta convert fixes

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    flagdanger committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. test files small bugs

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    flagdanger committed Aug 8, 2024
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  2. Revert "test files small bugs" 

    This reverts commit a907b7e.
    @flagdanger
    flagdanger committed Aug 8, 2024
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  3. removed config file

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    flagdanger committed Aug 8, 2024
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Commits on Aug 16, 2024

  1. PCU.h small fix

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    flagdanger committed Aug 16, 2024
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  2. Delete config.sh

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    flagdanger authored Aug 16, 2024
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Commits on Aug 19, 2024

  1. long dereference chains fixed

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    flagdanger committed Aug 19, 2024
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  2. PCUObj renamed to PCU, PCU remaned to PCU_C

    @flagdanger
    flagdanger committed Aug 19, 2024
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  3. Specified argument data type for templated functions PCU:: Add, Max, … 

    …and Min
    @flagdanger
    flagdanger committed Aug 19, 2024
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  4. Capstone updated to use PCU Object

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    flagdanger committed Aug 19, 2024
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Commits on Aug 21, 2024

  1. small fixes

    @flagdanger
    flagdanger committed Aug 21, 2024
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Commits on Aug 26, 2024

  1. Typo cleaning

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    flagdanger committed Aug 26, 2024
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  2. Test files changed to not use unique_ptr

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    flagdanger committed Aug 26, 2024
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Commits on Aug 27, 2024

  1. Removed uses of unique_ptr in other folders besides test

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    flagdanger committed Aug 27, 2024
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Commits on Aug 29, 2024

  1. Removed semi colon after Macro

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    flagdanger committed Aug 29, 2024
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Commits on Sep 23, 2024

  1. CGNS fixes

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    flagdanger committed Sep 23, 2024
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Commits on Oct 10, 2024

  1. cgns fixes

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    flagdanger committed Oct 10, 2024
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