Gnomad v4

[Jakob37]

Description

What is changed? What is the result of the changes?

fixes # (issue)

Type of change

• Major change
• Minor change
• Patch
• Documentation

Checklist:

• My code follows the style guidelines for NF pipelines at CMD
• I have performed a self-review of my code
• I have commented my code, particularly in hard-to-understand areas
• My changes generate no new warnings (Keep an eye on .nextflow.log !)
• I have updated the CHANGELOG
• The latest commit in the master branch is tagged
  with the correct version number

Major change

• Stub run completes without errors or new warnings
• onco run finishes without any new warnings/errors and the results can
  be loaded into scout
• wgs single run finishes without any new warnings/errors and the results
  can be loaded into scout
• wgs trio run finishes without any new warnings/errors and the results
  can be loaded into scout
• At least one other person has reviewed and approved my code
• I have made corresponding changes to the documentation

Minor change

• Stub run completes without errors or new warnings
• onco run finishes without any new warnings/errors and the results can
  be loaded into scout
• wgs single run finishes without any new warnings/errors and the results
  can be loaded into scout
• wgs trio run finishes without any new warnings/errors and the results
  can be loaded into scout
• At least one other person has reviewed and approved my code
• I have made corresponding changes to the documentation

Patch

• Stub run completes without errors or new warnings

[Optional] Are there any post-deployment tasks we need to perform?

• Task/link to issue 1
• Task/link to issue 2
• ...

Instructions for the reviewers

How to test the changes

1. Step 1
2. Step 2

Expected outcome

[Optional] Additional information

Review

Review performed by:

• Reviewer 1: Name1, (@Github_handle1)
• Reviewer 2: Name1, (@Github_handle2)
• ...

Testing performed by:

• Name, (@Github_handle)
• ...

Post-merge

• The master branch has been tagged with the new version number.