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diff --git a/.nojekyll b/.nojekyll
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diff --git a/accessing-ancient-metagenomic-data.html b/accessing-ancient-metagenomic-data.html
diff --git a/acknowledgements.html b/acknowledgements.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.5.56">
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@@ -185,17 +185,11 @@
   <a href="./introduction-to-microbial-genomics.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">Introduction to Microbial Genomics</span></span></a>
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-  <a href="./introduction-to-evolutionary-biology.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">Introduction to Evolutionary Biology</span></span></a>
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- <span class="menu-text"><span class="chapter-number">6</span>&nbsp; <span class="chapter-title">Introduction to Environmental DNA</span></span></a>
+ <span class="menu-text"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">Introduction to Environmental DNA</span></span></a>
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- <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Introduction to the Command Line</span></span></a>
+ <span class="menu-text"><span class="chapter-number">6</span>&nbsp; <span class="chapter-title">Introduction to the Command Line</span></span></a>
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- <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Introduction to R and the Tidyverse</span></span></a>
+ <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Introduction to R and the Tidyverse</span></span></a>
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+ <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Introduction to Python and Pandas</span></span></a>
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- <span class="menu-text"><span class="chapter-number">11</span>&nbsp; <span class="chapter-title">Taxonomic Profiling, OTU Tables and Visualisation</span></span></a>
+ <span class="menu-text"><span class="chapter-number">10</span>&nbsp; <span class="chapter-title">Taxonomic Profiling, OTU Tables and Visualisation</span></span></a>
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- <span class="menu-text"><span class="chapter-number">12</span>&nbsp; <span class="chapter-title"><em>De novo</em> Genome Assembly</span></span></a>
+ <span class="menu-text"><span class="chapter-number">11</span>&nbsp; <span class="chapter-title"><em>De novo</em> Genome Assembly</span></span></a>
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- <span class="menu-text"><span class="chapter-number">15</span>&nbsp; <span class="chapter-title">Genome Mapping</span></span></a>
+ <span class="menu-text"><span class="chapter-number">14</span>&nbsp; <span class="chapter-title">Genome Mapping</span></span></a>
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- <span class="menu-text"><span class="chapter-number">16</span>&nbsp; <span class="chapter-title">Phylogenomics</span></span></a>
+ <span class="menu-text"><span class="chapter-number">15</span>&nbsp; <span class="chapter-title">Phylogenomics</span></span></a>
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   <a href="./accessing-ancient-metagenomic-data.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">17</span>&nbsp; <span class="chapter-title">Accessing Ancient Metagenomic Data</span></span></a>
+ <span class="menu-text"><span class="chapter-number">16</span>&nbsp; <span class="chapter-title">Accessing Ancient Metagenomic Data</span></span></a>
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- <span class="menu-text"><span class="chapter-number">18</span>&nbsp; <span class="chapter-title">Ancient Metagenomic Pipelines</span></span></a>
+ <span class="menu-text"><span class="chapter-number">17</span>&nbsp; <span class="chapter-title">Ancient Metagenomic Pipelines</span></span></a>
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@@ -328,7 +322,7 @@
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- <span class="menu-text"><span class="chapter-number">19</span>&nbsp; <span class="chapter-title">Functional Profiling</span></span></a>
+ <span class="menu-text"><span class="chapter-number">18</span>&nbsp; <span class="chapter-title">Functional Profiling</span></span></a>
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+ <span class="menu-text"><span class="chapter-number">19</span>&nbsp; <span class="chapter-title">Resources</span></span></a>
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+ <span class="menu-text"><span class="chapter-number">20</span>&nbsp; <span class="chapter-title">Tools</span></span></a>
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+ <span class="menu-text"><span class="chapter-number">21</span>&nbsp; <span class="chapter-title">Chapter Writing Guidelines</span></span></a>
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- <span class="menu-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">Chapter Page Template</span></span></a>
+ <span class="menu-text"><span class="chapter-number">22</span>&nbsp; <span class="chapter-title">Chapter Page Template</span></span></a>
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- <span class="menu-text"><span class="chapter-number">24</span>&nbsp; <span class="chapter-title">Chapter Checklist</span></span></a>
+ <span class="menu-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">Chapter Checklist</span></span></a>
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