Comment out all filtering operations in the original copykat package.
Gao, R., Bai, S., Henderson, Y. C., Lin, Y., Schalck, A., Yan, Y., Kumar, T., Hu, M., Sei, E., Davis, A., Wang, F., Shaitelman, S. F., Wang, J. R., Chen, K., Moulder, S., Lai, S. Y. & Navin, N. E. (2021). Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes. Nat Biotechnol. doi:10.1038/s41587-020-00795-2.