Merge pull request #7 from Sage-Bionetworks-Workflows/bgrande/WORKFLO…

…WS-439/dockerfile

[WORKFLOWS-447] Create Dockerfile for `sagetasks`

.dockerignore

@@ -0,0 +1,55 @@
+# Temporary and binary files
+*~
+*.py[cod]
+*.so
+*.cfg
+!.isort.cfg
+!setup.cfg
+*.orig
+*.log
+*.pot
+__pycache__/*
+.cache/*
+.*.swp
+*/.ipynb_checkpoints/*
+.DS_Store
+
+# Project files
+.ropeproject
+.project
+.pydevproject
+.settings
+.idea
+.vscode
+tags
+.env
+
+# Package files
+*.egg
+*.eggs/
+.installed.cfg
+*.egg-info
+
+# Unittest and coverage
+htmlcov/*
+.coverage
+.coverage.*
+.tox
+junit*.xml
+coverage.xml
+.pytest_cache/
+
+# Build and docs folder/files
+build/*
+dist/*
+sdist/*
+docs/api/*
+docs/_rst/*
+docs/_build/*
+cover/*
+MANIFEST
+
+# Per-project virtualenvs
+.venv*/
+.conda*/
+.python-version

.github/workflows/ci.yml

@@ -1,7 +1,7 @@
 # GitHub Actions configuration
 # Reference: https://docs.github.com/en/actions
 
-name: tests
+name: Test Python package and publish releases
 
 on:
   push:

.github/workflows/docker.yml

@@ -0,0 +1,39 @@
+# This workflow builds and pushes the docker image using docker's v2 action
+# which requires explicitly setting up buildx and logging in
+
+name: Build and publish container to Docker Hub
+
+on:
+  push:
+    tags: ['v[0-9]*', '[0-9]+.[0-9]+*']  # Match tags that resemble a version
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    env:
+      DOCKER_ORG:  sagebionetworks
+      DOCKER_REPO: sagetasks
+      DOCKER_TAG:  ${{ github.ref_name }}
+    steps:
+      -
+        name: Set up QEMU
+        uses: docker/setup-qemu-action@v2
+      -
+        name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v2
+      -
+        name: Login to DockerHub
+        uses: docker/login-action@v2
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_PASSWORD }}
+      -
+        name: Build and push
+        uses: docker/build-push-action@v3
+        with:
+          context: .
+          platforms: linux/amd64,linux/arm64
+          push: true
+          tags: |
+            ${{ env.DOCKER_ORG }}/{{ env.DOCKER_REPO }}:latest
+            ${{ env.DOCKER_ORG }}/{{ env.DOCKER_REPO }}:{{ env.DOCKER_TAG }}

.github/workflows/docs.yml

@@ -1,5 +1,6 @@
 # Simple workflow for deploying static content to GitHub Pages
-name: Deploy static content to Pages
+
+name: Deploy Sphinx docs to GitHub Pages
 
 on:
   # Runs on pushes targeting the default branch

Dockerfile

@@ -0,0 +1,18 @@
+FROM python:3.10.6
+
+WORKDIR /usr/src/app
+
+ARG PSEUDO_VERSION=1
+
+RUN pip install --no-cache-dir pipenv
+
+COPY setup.* Pipfile* ./
+COPY src ./src/
+
+RUN SETUPTOOLS_SCM_PRETEND_VERSION_FOR_SAGETASKS=${PSEUDO_VERSION} \
+    pipenv install --system
+
+RUN --mount=source=.git,target=.git,type=bind \
+    pipenv install --system
+
+CMD [ "python", "-c", "import sagetasks" ]