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AG-1412 fixed bug in border condition handling logic #1297

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Original file line number Diff line number Diff line change
Expand Up @@ -18,10 +18,8 @@
<div>P-Value</div>
</div>
<div>
<div>{{ getSignificantFigures(data.value, 3) }}</div>
<div>
{{ getSignificantFigures(data.pValue, 3) }}
</div>
<div [innerHTML]="getSignificantFigures(data.value, 3)"></div>
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<div [innerHTML]="getSignificantFigures(data.pValue, 3)"></div>
</div>
</div>

Expand All @@ -36,17 +34,17 @@
[style]="getIntervalPositions(data)"
>
<div>
<div class="gct-details-panel-chart-interval-left">{{ getSignificantFigures(data.intervalMin, 3) }}</div>
<div class="gct-details-panel-chart-interval-left" [innerHTML]="getSignificantFigures(data.intervalMin, 3)"></div>
</div>
<div>
<div class="gct-details-panel-chart-interval-right">{{ getSignificantFigures(data.intervalMax, 3) }}</div>
<div class="gct-details-panel-chart-interval-right" [innerHTML]="getSignificantFigures(data.intervalMax, 3)"></div>
</div>
</div>
<div
class="gct-details-panel-chart-value"
[style]="getValuePosition(data)"
>
<div>{{ getSignificantFigures(data.value, 3) }}</div>
<div [innerHTML]="getSignificantFigures(data.value, 3)"></div>
</div>
</div>
</div>
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,7 @@ import { ApiService, HelperService } from '../../../../core/services';
import { GeneService } from '../../../../features/genes/services';
import { routes } from '../../../../app.routing';
import { comparisonGeneEmptyHGNCMock, comparisonGeneMock1, comparisonGeneMock2 } from '../../../../testing';
import { GCTGeneTissue } from '../../../../models';

const DEFAULT_SIGNIFICANCE_THRESHOLD = 0.05;

Expand Down Expand Up @@ -518,5 +519,32 @@ describe('Component: GeneComparisonToolComponent', () => {
const expected2 = 'ENSG00000147065';
expect(label2).toBe(expected2);
});

it('should set circle size to zero for undefined pValues', () => {
let tissue: GCTGeneTissue | undefined;
// undefined values should result in a circle size of zero
expect(tissue).toBeUndefined();
const result = component.getCircleSize(tissue?.adj_p_val);
expect(result).toBe(0);
});

it('should set circle size to zero for null pValues', () => {
// null values should result in a circle size of zero pixels
const pValue = null;
const result = component.getCircleSize(pValue);
expect(result).toBe(0);
});

it('should set circle size for pValues within acceptable ranges', () => {
let expectedSizeInPixels = 0;
let pValue = 0.5;
let result = component.getCircleSize(pValue);
expect(result).toBe(expectedSizeInPixels);

expectedSizeInPixels = 33;
pValue = 0.04;
result = component.getCircleSize(pValue);
expect(result).toBe(expectedSizeInPixels);
});
});
});
Original file line number Diff line number Diff line change
Expand Up @@ -901,13 +901,14 @@ export class GeneComparisonToolComponent implements OnInit, AVI, OnDestroy {
}
}

getCircleSize(pval: number | undefined) {
getCircleSize(pval: number | null | undefined) {
// define min and max size of possible circles in pixels
const MIN_SIZE = 6;
const MAX_SIZE = 50;

// shouldn't be undefined but if it is, don't show a circle
if (pval === undefined)
// pval shouldn't be undefined but if it is, don't show a circle
// null means there is no data in which case, also don't show a circle
if (pval === null || pval === undefined)
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return 0;

// if significance cutoff radio button selected and
Expand Down
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