lint

genie/database_to_staging.py

@@ -272,13 +272,13 @@ def get_whitelist_variants_idx(mafdf):
 # TODO: Add to transform.py
 def configure_maf(mafdf, remove_variants, flagged_variants):
     """Configures each maf dataframe, does germline filtering
-    
-    Germline filtering for MAF files uses the gnomAD columns that refer to the 
-    allele frequencies (AF) of variants in different population groups 
+
+    Germline filtering for MAF files uses the gnomAD columns that refer to the
+    allele frequencies (AF) of variants in different population groups
     from the gnomAD (Genome Aggregation Database). This filter will filter out
-    variants with a maximum AF > 0.05% across all populations which are typically 
+    variants with a maximum AF > 0.05% across all populations which are typically
     common germline variants.
-    
+
     Germline filtering for MAF files occurs during release instead of during processing
     because the MAF file gets re-annotated during processing via genome nexus annotation.