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[GEN-1622] remove sample class filter #581

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merged 7 commits into from
Dec 3, 2024

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danlu1
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@danlu1 danlu1 commented Nov 26, 2024

Problem:

cfDNA samples are not released publicly.

Solution:
Make cfDNA samples public in main GENIE releases by removing sample_class_filter.

Testing:
Unit test has been added. And integration test has been done. Comparison report between syn11611431.111 (with sample_class_filter) and syn11611431.117 (without sample_class_filter) has been generated and got the expected result: two cfDNA sample rows are propagated.

Screenshot 2024-11-25 at 9 53 21 PM

@danlu1 danlu1 requested a review from a team as a code owner November 26, 2024 17:39
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@thomasyu888 thomasyu888 left a comment

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🔥 LGTM! will leave for rixing for final review.

genie/consortium_to_public.py Show resolved Hide resolved
@thomasyu888 thomasyu888 requested a review from rxu17 December 2, 2024 15:02
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LGTM! Just a couple of comments

genie/consortium_to_public.py Show resolved Hide resolved
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@danlu1 danlu1 merged commit 567f3f0 into main Dec 3, 2024
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@rxu17 rxu17 deleted the gen-1622-remove-sample_class_filter branch December 3, 2024 08:08
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3 participants