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Merge config functions from rc23.11.1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,63 @@ | ||
| #' @export | ||
| format_edge_type <- function(edge_types) { | ||
| et <- dplyr::bind_rows(lapply(edge_types, function(x) data.frame(value = x[[2]], schema_name = x[[1]]))) | ||
| components <- et |> | ||
| dplyr::filter(tolower(value) == "component") |> | ||
| dplyr::pull(schema_name) | ||
| et |> | ||
| dplyr::filter(value %in% c("Component", "Filename")) |> | ||
| dplyr::group_by(schema_name) |> | ||
| dplyr::summarise(file_based = "Filename" %in% value) |> | ||
| dplyr::filter(schema_name %in% components) | ||
| } | ||
|
|
||
| #' @export | ||
| get_display_names <- function(qlist) { | ||
| if (!"schema_url" %in% names(qlist)) stop("qlist needs element named `schema_url`") | ||
| if (!"node_list" %in% names(qlist)) stop("qlist needs at least one element named `node_list`") | ||
| httr::GET( | ||
| url = "https://schematic-dev.api.sagebionetworks.org/v1/schemas/get_nodes_display_names", | ||
| query = qlist | ||
| ) | ||
| } | ||
|
|
||
| #' @export | ||
| create_template_config <- function(data_model, include_schemas = NULL, exclude_schemas = NULL) { | ||
| if (!is.null(include_schemas) && !is.null(exclude_schemas)) stop("include_schemas and exclude_schemas cannot both have values") | ||
| edges <- graph_by_edge_type(schema_url = data_model) | ||
| schema_names <- format_edge_type(edges) | ||
| nl <- setNames(as.list(schema_names$schema_name), rep("node_list", length(schema_names$schema_name))) | ||
| dnames <- get_display_names(c(schema_url = data_model, nl)) |> httr::content() | ||
| config <- data.frame(display_name = unlist(dnames), schema_name = unlist(nl)) |> | ||
| dplyr::left_join(schema_names, by = "schema_name") |> | ||
| dplyr::mutate(type = ifelse(file_based, "file", "record")) |> | ||
| dplyr::select(-file_based) | ||
| if (!is.null(include_schemas)) { | ||
| if (any(length(x <- setdiff(include_schemas, config$schema_name)))) stop(sprintf("%s is not a schema name in the data model", x)) | ||
| config <- dplyr::filter(config, schema_name %in% include_schemas) | ||
| } | ||
| if (!is.null(exclude_schemas)) { | ||
| if (any(length(y <- setdiff(exclude_schemas, config$schema_name)))) stop(sprintf("%s is not a schema name in the data model", y)) | ||
| config <- dplyr::filter(config, !schema_name %in% exclude_schemas) | ||
| } | ||
| config | ||
| } | ||
|
|
||
| #' @export | ||
| create_dca_template_config <- function(data_model, include_schemas = NULL, exclude_schemas = NULL) { | ||
| df <- create_template_config(data_model, include_schemas, exclude_schemas) | ||
| schematic_version <- httr::GET("https://schematic-dev.api.sagebionetworks.org/v1/version") |> | ||
| httr::content() | ||
| list( | ||
| manifest_schemas = df, | ||
| service_version = schematic_version, | ||
| schema_version = "" | ||
| ) | ||
| } | ||
|
|
||
| #' @export | ||
| #' @description Create a DCA-specific template generation function | ||
| write_dca_template_config <- function(data_model, file, include_schemas = NULL, exclude_schemas = NULL) { | ||
| df <- create_dca_template_config(data_model, include_schemas, exclude_schemas) | ||
| jsonlite::write_json(df, file, pretty = TRUE, auto_unbox = TRUE) | ||
| } |
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