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feat(openchallenges): implement input data type filter on challenge search page #2646

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wants to merge 1,135 commits into from
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feat(openchallenges): implement input data type filter on challenge search page #2646

wants to merge 1,135 commits into from

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rrchai
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@rrchai rrchai commented Apr 22, 2024 •
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Changelogs

  • enable to list out EDAM data results (sorted alphabetically) in the input data type filter
  • enable to search data type by keywords in the search bar of the filter
  • enable to filter challenges by input data type keywords in the search bar of the page
  • enable to filter challenges by selected input data type(s)

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Recording 2024-04-24 at 11 29 21

tschaffter and others added 30 commits September 8, 2023 13:29
@tschaffter
ci: Enable Dev Container in CI workflow to push to GHCR (Sage-Bionetw…
bae22df 
…orks#2106)

* Try again to publish (baseline)

* Login

* Share `.docker/` with the dev container

* Try new method to login with GHCR

* Specify registry

* reformat command

* Login just before publish

* Show helpers

* Login

* Cleanup

* Cleanup

* Enable workflow to publish images when pushing to `main`

* Update job name
@tschaffter
feat: Task openapi-generate now builds the API description (Sage-Bi…
0dc1390 
…onetworks#2104)

* Build API description before running `openapi-generate`

* Use `{projectRoot}`

* Fix typo

* The task `lint` of API description project now builds first

* The task `lint` of API description project now builds first
@tschaffter
Rename the task openapi-generate to generate (Sage-Bionetworks#2111)
01b8426
@andrewelamb
feat: Add /assetTypes/{assetType}/assetViews/{assetViewId}/datasets/{…
5117724 
…datasetId}/manifestJson endpoint (Sage-Bionetworks#2113)

* add new endpoint

* now using schemtic.load_df for loading manifest files
@tschaffter
Specify the missing inputs of the footer (Sage-Bionetworks#2115)
770a5cc
@rrchai
feat(angular): Remove deprecated Angular API client (Sage-Bionetworks…
0e20ec3 
…#2116)
@rrchai
display unique contributions (Sage-Bionetworks#2122)
e3a4e5c
@tschaffter
Fix OC apex port (Sage-Bionetworks#2125)
1827c94
@vpchung @rrchai
feat(data): Sept 2023 OC DB update (Sage-Bionetworks#2119)
a294ed4 
* update challenge names

* update challenge status

* add legacy dream challenges

* udpate precisionFDA contact email

* add new orgs

* update challenge counts; update contribution roles

* add 2 orgs

* update info about CausalBench; add 3 more challenges

* add 1 platform

* add missing roles; remove duplicate roles

* update challenge count

* parsing fix

* update data based on form responses

* add data from form responses

* add challengeCountsPerYear data for timeline plot, also add backup codes to acquire the data

---------

Co-authored-by: Rongrong Chai <[email protected]>
@tschaffter
Publish again the OC API gateway image (Sage-Bionetworks#2129)
0c441eb
@vpchung
fix(data): additional data updates/fixes (Sage-Bionetworks#2132)
af6ac02 
* add EvalAI platform

* add Kaggle-annotated organizers

* "add" Kaggle as organization

* update challenge counts; update roles
@vpchung
feat(ui): add text + link for truncated profile descriptions (Sage-Bi…
52e3032 
…onetworks#1950)

* add text to truncated challenge desc

* add text to truncated org desc

* update to latest project structure

* update link text to "Continue reading"; update colors

* remove text resizing

* update link (next line design)

* update link (inline design)

* use next line design

* extract shared styling between profiles to _general

* add underline offset for `read-more`
@tschaffter
Remove duplicated VS Code extension information (Sage-Bionetworks#2140)
db6edaf
@tschaffter
feat: Update API to get N random challenges (Sage-Bionetworks#2135)
863f4d9 
* Update API description

* Generate challenge service

* Sort random by score

* Finalize random sorter

* Limit the value of the seed

* Remove unused spring param
@andrewelamb
add version endpoint (Sage-Bionetworks#2126)
41631c2
@tschaffter
feat: Migrate OC SSR to Angular v16 (Sage-Bionetworks#2127)
4ad588d 
* Run generator task `setup-ssr`

* Pass `APP_BASE_URL` in `server.ts`

* Pass `APP_BASE_URL` in `server.ts`

* Comment out chart library

* Enable server to load config.json

* Create gtm component

* Cleanup app.component.ts

* Remove unecessary files

* Some cleanup

* No longer use self-closing tag in index.html

* Restore `*sageAppShellNoRender` on home page

* Update agora ssr port

* Update config to hide es2022 warning

* Adding SEO data to the home page

* Refactor SEO

* Add initial seo data to org profile component

* Attempt to use subscribe to set SEO

* Add `<tbody>` to tables

* Set SEO data to org profile page

* Org profile SEO uses some home SEO data

* Move default SEO data to util

* Org image for SEO is now 500x500

* Fix image for CSR app

* Move dist app folder to the project folder
@tschaffter
Comment out scrollPositionRestoration (Sage-Bionetworks#2153)
ed33b17
@tschaffter
feat: Start serving the Challenges of the Day (Sage-Bionetworks#2155)
29b50f5 
* Create random-challenge-list component

* Update OC API client for Angular

* Show 3 random challenges

* Set daily seed

* Add See More button

* Restore plot

* Cleanup

* Simplify

* Simplify

* Update language
@mdsage1 @tschaffter
refactor: Update field to constructor injection in challenge-service …
bc05e00 
…app (Sage-Bionetworks#2108)

* update index.build

* modified keycloak KeycloakManager

* modified keycloak KeycloakManager

* update SecurityCOnfiguration

* last files updated

* update final files

* update final field to constructor injectioins

* update typo

* fix api delegate

* update api delegate

* Update ChallengeApiController.java

remove changes

* Update ChallengeApiDelegateImpl.java

* update auto generated files

* revert keycloak manager

* keycloak revert

* revert file change

* format update

* update to constructor injection

* update format (auto)

* removed comment

* added final

* Update apps/openchallenges/challenge-service/src/main/java/org/sagebionetworks/openchallenges/challenge/service/configuration/HibernateSearchIndexBuild.java

Co-authored-by: Thomas Schaffter <[email protected]>

* removed comment

* remove comment

* add in Autowired

---------

Co-authored-by: Thomas Schaffter <[email protected]>
@tschaffter
feat: Dockerize OC app with SSR support (Sage-Bionetworks#2157)
ddbfa70 
* Add dockerfile for ssr

* Can run the app with node

* Do not render the stats component on the server

* Add comment in dockerfile

* Build the image with the context set to the workspace folder

* Default docker image is now ssr

* Add health endpoint to ssr server

* Add curl to the ssr image

* Cleanup config file

* Run node as a non-root user

* Generate config file

* Remove docker files for CSR

* Fix API_URL

* Introduce SSR_API_URL and CSR_API_URL

* Run the task `server` along `build` in the CI workflow

* Bump app container max memory to 1G
@vpchung
fix(ui): add biomedical-ness to landing page graphic (Sage-Bionetwork…
ac83f8c 
…s#2156)

* add v2 of magnifying glass graphic

* use new graphic

* comment out diagnostic div (?)

* add latest graphic; update height displayed

* Revert "comment out diagnostic div (?)"

This reverts commit a6c7396.

* lint

* add OC acronym to text; increase width by a smidge
@mdsage1
refactor: update org-service files using field injection (Sage-Bionet…
84bbba9 
…works#2165)

* update org-service files using field injection

* remove comments
@vpchung
fix(ui): metric updates on homepage (Sage-Bionetworks#2159)
053b9f1 
* move metrics out of statistics-viewer component

* add platform graphic; add new metric

* remove unneeded code from statistics controller

* switch to col-layout; reduce padding

* replace container-lg with container
@tschaffter
feat: Prevent sending analytics data to GA during development (Sage-B…
9bdd016 
…ionetworks#2164)

* Update .env.example

* Update app config files

* Update provider

* Inject googleTagManagerId and GoogleTagManagerService

* Cleanup

* Remove unused factory

* Cleanup
@andrewelamb
feat: add post endpoints (Sage-Bionetworks#2124)
84e216b 
* add post endpoints

* deleted great expectations files

* added new endpoints

* added andpoints

* delted great expecations

* added great expectatiosn to gitignore file

* added endpoints

* added endpoints

* fix ignore file

* add test manifests

* fix endpoint description

* renamed validation files
@tschaffter
Move client hydration to the server config (Sage-Bionetworks#2173)
4cd828a
@vpchung
fix(ui): fix metric bugs (Sage-Bionetworks#2175)
1331a03 
* add missing module

* remove `clickable` class

* fix test
@rrchai
fix: Remove error on challenge contributors page (Sage-Bionetworks#2179)
03f15f3 
* remove error in contributors

* remove changes
@rrchai @tschaffter
feat: Update time-related sorters and move them into Category filter (
78cfb1d 
Sage-Bionetworks#2163)

* add time windows for time-related sorters

* move ending_soon to bottom

* add status filter

* feat: transfer time-related sorters to filter (backend) (#3)

* update descriptions

* update categories filter in java

* rename enum values to use "start/end"

* refactor a bit

* fix indentation

* fix indentation

* move time-related sorter to category filter in app

* feat: Add start_date and end_date sorters (backend) (#4)

* update service

* update custom java

* add some example requests

* fix typo in RECENTLY_STARTED and RECENTLY_ENDED

* add start date and end date sorters in app

* replace "Start/End Date" sorters by "Newest" sorter

* rename to "Start Date"

* reorder filters

* Update apps/openchallenges/challenge-service/requests.http

Co-authored-by: Thomas Schaffter <[email protected]>

* Update apps/openchallenges/challenge-service/requests.http

Co-authored-by: Thomas Schaffter <[email protected]>

* Update apps/openchallenges/challenge-service/requests.http

Co-authored-by: Thomas Schaffter <[email protected]>

* Update apps/openchallenges/challenge-service/requests.http

Co-authored-by: Thomas Schaffter <[email protected]>

* update var name for time window

* update to use one month on xxx soon

---------

Co-authored-by: Thomas Schaffter <[email protected]>
@rrchai
fix(angular): stop requesting image url if key is not present (Sage-B…
8ff60c5 
…ionetworks#2178)
@rrchai
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rrchai commented Apr 24, 2024

The filter should now be able to search the EDAM data concepts and be used to filter challenges.

There is a bug I notice for the search dropdown filter - tracked here, and will be fixed in a future pr.

@rrchai rrchai marked this pull request as ready for review April 24, 2024 19:34
@rrchai rrchai changed the base branch from main to drawio April 24, 2024 19:35
@rrchai rrchai closed this Apr 24, 2024
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rrchai commented Apr 24, 2024

Sorry, I tried to switch base branch to help clean up outdated file differences against the main branch. I think I switched to a dead end~ The PR is automatically closed and I am not able to reopen it.

@tschaffter I wonder if you are able to reopen the PR and switch base branch back to main. Otherwise, I will open a new PR.

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@rrchai I can't reopen it

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Quality Gate Passed Quality Gate passed for 'openchallenges-app'

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0 New issues
0 Accepted issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud

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@tschaffter tschaffter Awaiting requested review from tschaffter

@vpchung vpchung Awaiting requested review from vpchung

@gaiaandreoletti gaiaandreoletti Awaiting requested review from gaiaandreoletti

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[Feature] Create a filter component for challenge input data types
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@rrchai @tschaffter @andrewelamb @vpchung @mdsage1 @linglp