Merge pull request #1528 from Sage-Bionetworks/FDS-2238-automate-cli-…

…tests

[FDS-2238, FDS-2236] Automate CLI test plan

tests/data/mock_manifests/CLI_tests/CLI_biospecimen.csv

@@ -0,0 +1,3 @@
+Sample ID,Patient ID,Tissue Status,Component,Id,entityId
+123,123,Malignant,Biospecimen,3e413bde-0571-458c-ad93-d56c2b25fadd,syn61260197
+456,456,Healthy,Biospecimen,fc314afe-5714-4b58-8c95-3dfd78dc827d,syn61260197

tests/data/mock_manifests/CLI_tests/CLI_patient_invalid.csv

@@ -0,0 +1,11 @@
+Patient ID,Sex,Year of Birth,Diagnosis,Component,Cancer Type,Family History
+1,Female,,Healthy,Patient,Random,Random
+2,Female,,Healthy,Patient,Breast,"Colorectal,Breast"
+3,Female,,Healthy,Patient,Breast,"Colorectal,Breast"
+4,Female,,Healthy,Patient,Breast,"Colorectal,Breast"
+5,Female,,Healthy,Patient,Breast,"Colorectal,Breast"
+6,Female,,Healthy,Patient,Breast,"Colorectal,Breast"
+7,Female,,Healthy,Patient,Breast,"Colorectal,Breast"
+8,Female,,Healthy,Patient,Breast,"Colorectal,Breast"
+9,Female,,Healthy,Patient,Breast,"Colorectal,Breast"
+10,Female,,Healthy,Patient,Breast,"Colorectal,Breast"

tests/data/test_configs/CLI_test_config.yml

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+# This config is used to change the fileview for certain CLI tests
+asset_store:
+  synapse:
+    config: "../../../.synapseConfig"
+    master_fileview_id:  'syn63923487'
+
+google_sheets:
+  service_acct_creds: "../../../schematic_service_account_creds.json"

tests/data/test_configs/CLI_test_config2.yml

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+# This config is used to change the fileview for certain CLI tests
+asset_store:
+  synapse:
+    config: "../../../.synapseConfig"
+    master_fileview_id:  'syn51707141'
+
+manifest:
+  data_type:
+    - "MockComponent"
+
+google_sheets:
+  service_acct_creds: "../../../schematic_service_account_creds.json"