Merge pull request #1 from HealthIntersections/master

Merge pull request

.dockerignore

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+.git
+Dockerfile
+terminology
+.github
+.dockerignore

.github/workflows/linux-docker-build.yml

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+on:
+  # Trigger the workflow on push or pull request,
+  # but only for the main branch
+  push:
+    branches:
+      - master
+#  pull_request:
+jobs:
+  Build-Docker-Image:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Check out repository code
+      uses: actions/checkout@v2
+#    -
+#      name: Login to Docker Hub
+#      uses: docker/login-action@v2
+#      with:
+#        username: ${{ secrets.DOCKERHUB_USERNAME }}
+#        password: ${{ secrets.DOCKERHUB_TOKEN }}      
+    - name: Cache terminology files
+      uses: actions/cache@v2
+      with:
+        path: ~/terminology
+        key: terminology-${{ github.sha }}
+        restore-keys: terminology-
+    - name: Setup MySQL
+      run: |
+        docker network create gh
+        docker run \
+          --network gh \
+          --name mysql \
+          -e MYSQL_ROOT_PASSWORD=test \
+          -e MYSQL_USER=test \
+          -e MYSQL_PASSWORD=test \
+          -e MYSQL_DATABASE=test \
+          -d mysql:8
+    - name: Docker Build
+      run: |
+        docker  build \
+          --tag fhirserver \
+        .
+#    - name: Scan Code
+#      run: |
+#        export DISPLAY=0:0
+#        docker run --entrypoint /work/fhirserver/utilities/codescan/codescan fhirserver /work/bootstrap
+    - name: Prepare ini file
+      env:
+        FHIRSERVER_LOCATIONS_CLONE_PATH: /work/fhirserver
+        FHIRSERVER_LOCATIONS_TEST_CASES_CLONE_PATH: /work/bootstrap/source/fhir-test-cases
+        FHIRSERVER_LOCATIONS_MARKDOWN_CLONE_PATH: /work/bootstrap/source/delphi-markdown
+        FHIRSERVER_LOCATIONS_SNOMED_CACHE_PATH: /terminology/fhir-server/snomed.test.cache
+        FHIRSERVER_MYSQL_SERVER: mysql
+        FHIRSERVER_EMAIL_SENDER: [email protected]
+        FHIRSERVER_EMAIL_DESTINATION: [email protected]
+        FHIRSERVER_EMAIL_PASSWORD: ${{ secrets.FHIRSERVER_EMAIL_PASSWORD }}
+        FHIRSERVER_SSL_CERT_PATH: /work/fhirserver/fixtures/domain.crt
+        FHIRSERVER_SSL_KEY_PATH: /work/fhirserver/fixtures/domain.key
+        FHIRSERVER_SSL_CACERT_PATH: /work/fhirserver/fixtures/rootCA.crt
+        FHIRSERVER_SSL_PASSWORD: password
+      run: |
+        cat fixtures/test-settings.ini.template | envsubst > ~/test-settings.ini
+    - name: Ensure SNOMED cache is present
+      run: |
+        mkdir -p ~/terminology/fhir-server
+        wget -q --no-clobber https://storage.googleapis.com/ig-build/snomed.test.cache -O ~/terminology/fhir-server/snomed.test.cache || true
+        ls  ~/terminology/fhir-server/snomed.test.cache
+    - name: Run tests in docker
+      run: |
+        docker images --all
+        docker run \
+          --network gh \
+          -v ~/terminology:/terminology \
+          -v ~/test-settings.ini:/work/fhirserver/exec/64/test-settings.ini \
+          fhirserver -tests
+
+#    - name: Tag and push Docker image
+#      run: |
+#        # Extract the FHIR server version from the library/version.inc file
+#        FHIR_VERSION=$(grep -oP "FHIR_CODE_FULL_VERSION = '\K[^']+" library/version.inc)
+#
+#        # Tag the Docker image with the extracted version and "latest"
+#        docker tag fhirserver ${{ secrets.DOCKERHUB_USERNAME }}/fhirserver:$FHIR_VERSION
+#        docker tag fhirserver ${{ secrets.DOCKERHUB_USERNAME }}/fhirserver:latest
+#
+#        # Push both tagged images to Docker Hub
+#        docker push ${{ secrets.DOCKERHUB_USERNAME }}/fhirserver:$FHIR_VERSION
+#        docker push ${{ secrets.DOCKERHUB_USERNAME }}/fhirserver:latest