updated README

README.md

@@ -7,8 +7,9 @@ The script takes as main input the path to the cycle folder that cointains the r
 ## CLI
 ### Required arguments
 | Argument| Type| Description | Default value |
-|----|----|----|---|
-|-i|string/path|Absolute path to the the parent folder of the raw tiles, i.e. the cycle folder whose name follows the pattern X_Cycle_N, where N represents the cycle number.|NA|
+|----|----|----|----|
+|-i|string/path|Absolute path to the the parent folder of the raw tiles, i.e. the cycle folder whose name follows the pattern X_Cycle_N, \
+ where N represents the cycle number.|NA|
 
 |-o|string/path|Absolute path to the directory in which the outputs will be saved. If the output directory doesn't exist it will be created. |NA| 
 
@@ -21,13 +22,13 @@ The script takes as main input the path to the cycle folder that cointains the r
 |-he|boolean flag|Give this flag to extract only the set of images with the highest exposure time|FALSE|
 
 ## Container usage
-# download container:
+### download container:
 - Docker
 ```
-singularity pull docker://ghcr.io/schapirolabor/multiplex_macsima:v1.1.0 
+docker pull ghcr.io/schapirolabor/multiplex_macsima:v1.1.0
 
 ```
 - Singularity
 ```
-docker pull ghcr.io/schapirolabor/multiplex_macsima:v1.1.0
+singularity pull docker://ghcr.io/schapirolabor/multiplex_macsima:v1.1.0
 ```