Spell checking fixes

R/cluster.R

@@ -1,7 +1,7 @@
 #' Read distance matrices
 #'
 #' Read in distances from a file that is formatted with three columns for the
-#' row, column, and distance of a sparse, square matrix or in a Phylip-formatted
+#' row, column, and distance of a sparse, square matrix or in a phylip-formatted
 #' distance matrix.
 #'
 #' @export
@@ -54,7 +54,7 @@ read_dist <- function(distance_file, count_table,
 }
 
 
-#' Cluster entitites together
+#' Cluster entities together
 #'
 #' Clusters entities represented in a distance matrix and count table using
 #' one of several algorithms and outputs information about the composition and
@@ -201,7 +201,7 @@ read_count <- function(count_table_path) {
 
 #' Create Sparse Matrix
 #'
-#' Given a list of i indexs, j indexes, and distances values,
+#' Given a list of i indexes, j indexes, and distances values,
 #' we can create a sparse distance matrix for you. Each vector
 #' must have the same size.
 #' @param i_index A list of i indexes, must be numeric

R/cluster_object-getters.R

@@ -54,7 +54,7 @@ get_bins <- function(cluster_data) {
 #'
 #' @export
 #' @description
-#' GetShared retuns the generated abundance `data.frame`
+#' GetShared returns the generated abundance `data.frame`
 #' from the `cluster()` function
 #' @param cluster_data The output from the `cluster()` function.
 #' @examples

README.Rmd

@@ -61,6 +61,6 @@ To get started, look at the ["Getting started"](https://www.schlosslab.org/clust
 
 ## Contributions
 
-For feature request please visit the issue page in github and use the feature
+For feature request please visit the issue page in GitHub and use the feature
 tag. If you would like to contribute pull request are welcomed!
 

README.md

@@ -48,5 +48,5 @@ started”](https://www.schlosslab.org/clustur/) page.
 
 ## Contributions
 
-For feature request please visit the issue page in github and use the
+For feature request please visit the issue page in GitHub and use the
 feature tag. If you would like to contribute pull request are welcomed!

cran-comments.md

@@ -3,3 +3,5 @@
 0 errors | 0 warnings | 1 note
 
 * This is a new release.
+* All of our projects use C++ 11 so we can continue to support older architectures. 
+* Build checks for macos-latest (devel), ubuntu-lastest (devel), windows-latest (devel), windows latest (4.1), ubuntu-latest (release), ubuntu-latest (oldrel-1), ubuntu-latest (oldrel-2), and ubuntu-latest (oldrel-3) are currently passing via GitHub Actions.

vignettes/clustur.Rmd

@@ -18,7 +18,7 @@ knitr::opts_chunk$set(
 ## Background
 clustur was developed to be similar to [mothur's cluster
 function](https://mothur.org/wiki/cluster/) that was written in C++. In order to
-cluster your data, users need to provide their own sparse or Phylip-formatted
+cluster your data, users need to provide their own sparse or phylip-formatted
 distance matrix. They also need to provide a count table that either comes from
 mothur or that they create in R. Once these objects are built users can call the
 `cluster()` function. We currently support 5 methods: opticlust (default) and