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@SciCrunch

FDI Laboratory

FAIR Data Informatics Laboratory at the University of California, San Diego developing the SciCrunch.org infrastructure

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  1. NIF-Ontology NIF-Ontology Public

    NIF Standard Ontologies (NIFSTD)

    54 17

  2. scibot scibot Public

    curation workflow automation and coordination

    Python 41 12

  3. sparc-curation sparc-curation Public

    code and files for SPARC curation workflows

    Python 14 12

  4. bio-answerfinder bio-answerfinder Public

    A question answering system for biomedical literature

    Java 9

  5. Antibody-Watch Antibody-Watch Public

    Antibody Watch: Text Mining Antibody Specificity from the Literature

    Jupyter Notebook 7 1

  6. bio_electra bio_electra Public

    Bio-Electra - Small and efficient discriminatively pre-trained language representation models for biomedical text mining

    Python 4 1

Repositories

Showing 10 of 29 repositories
  • SciGraph Public Forked from SciGraph/SciGraph

    A Neo4j backed ontology store

    SciCrunch/SciGraph’s past year of commit activity
    Java 0 Apache-2.0 49 0 1 Updated Dec 19, 2024
  • sparc-curation Public

    code and files for SPARC curation workflows

    SciCrunch/sparc-curation’s past year of commit activity
    Python 14 MIT 12 48 1 Updated Dec 13, 2024
  • quantitative-db Public

    A flexible database for storing arbitrary quantitative measurements

    SciCrunch/quantitative-db’s past year of commit activity
    Python 0 MIT 0 3 4 Updated Dec 5, 2024
  • NIF-Ontology Public

    NIF Standard Ontologies (NIFSTD)

    SciCrunch/NIF-Ontology’s past year of commit activity
    54 CC-BY-4.0 17 148 4 Updated Nov 26, 2024
  • key_resource_table_extractor Public
    SciCrunch/key_resource_table_extractor’s past year of commit activity
    Python 1 0 0 0 Updated Oct 12, 2024
  • table_lm Public
    SciCrunch/table_lm’s past year of commit activity
    Python 0 0 0 0 Updated Oct 5, 2024
  • API-Handbook-Docs Public

    Repository for API Handbook Gitbook

    SciCrunch/API-Handbook-Docs’s past year of commit activity
    0 0 0 0 Updated Sep 14, 2024
  • SPARC-Citations Public

    Scripts to aggregate SPARC Citation information

    SciCrunch/SPARC-Citations’s past year of commit activity
    Python 0 0 1 0 Updated Sep 5, 2024
  • scibot Public

    curation workflow automation and coordination

    SciCrunch/scibot’s past year of commit activity
    Python 41 Apache-2.0 12 23 2 Updated Aug 29, 2024
  • paperpdf2xml Public

    A set of Python 3 CLI to convert scientific papers in PDF format to XML documents with sections and tables.

    SciCrunch/paperpdf2xml’s past year of commit activity
    Python 2 0 0 0 Updated Nov 15, 2023
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