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viewer.rkt
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viewer.rkt
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#lang racket
; TODO need to add a warning for files that are not accounted for in
; any manifest even though it is not technically an error in the same
; way that we do for folders
; TODO missing biophsyics as a general appraoch
; TODO remote-organization is currently read-only and is not easy to change/switch
; TODO make manifest report and paths report work from view prod export
; TODO protocols.io renew credientials workflow
; TODO reminder for download to avoid caching probably
; TODO need to refresh when fetch finishes
(require racket/gui
racket/generic
racket/pretty
racket/runtime-path
framework
compiler/compilation-path
compiler/embed
(rename-in (only-in gui-widget-mixins tooltip-mixin) [tooltip-mixin tooltip-mixin-real])
json
json-view
net/url
(except-in gregor date? date)
(prefix-in oa- orthauth/base)
orthauth/paths
orthauth/python-interop
orthauth/utils
)
(define-runtime-path asdf "viewer.rkt")
(define this-file (path->string asdf))
(define this-file-compiled (with-handlers ([exn? (λ (e) this-file)]) (get-compilation-bytecode-file this-file)))
(define this-file-exe (embedding-executable-add-suffix (path-replace-extension this-file "") #f))
(define this-file-exe-tmp (path-add-extension this-file-exe "tmp"))
(define this-package-path (let-values ([(parent name dir?) (split-path this-file)]) parent))
(when (and this-file-exe-tmp (file-exists? this-file-exe-tmp))
; windows can't remove a running exe ... but can rename it ... and then delete the old
; file on next start
(delete-file this-file-exe-tmp))
(define (make-lexical-parameter [default #f])
"sometimes you want the parameter interface but don't want the thread local behavior
note of course that you don't get dynamic binding with version since it is not thread local"
(let ([v default])
(case-lambda
[() v]
[(value) (set! v value)])))
(define running? #t) ; don't use parameter, this needs to be accessible across threads
(define update-running? #f)
(define debug-push (make-lexical-parameter #f))
;; parameters (yay dynamic variables)
(define path-config (make-parameter #f))
(define path-log-dir (make-parameter #f))
(define path-cache-dir (make-parameter #f))
(define path-cache-push (make-parameter #f))
(define path-cache-datasets (make-parameter #f))
(define path-cleaned-dir (make-parameter #f))
(define path-export-dir (make-parameter #f))
(define path-export-datasets (make-parameter #f))
(define path-source-dir (make-parameter #f))
(define url-prod-datasets (make-parameter "https://cassava.ucsd.edu/sparc/datasets"))
; true global variables that should not be thread local
(define current-projects (make-lexical-parameter)) ; FIXME check that default value ???
(define (current-blob) (hash-ref uuid-json-hash (id-uuid (current-dataset))))
(define current-dataset (make-lexical-parameter))
(define current-datasets (make-lexical-parameter)) ; FIXME check that default value ???
(define current-datasets-view (make-lexical-parameter))
(define current-jview (make-lexical-parameter))
(define current-mode-panel ; TODO read from config/history
(make-lexical-parameter))
(define remote-org-keys (make-lexical-parameter))
(define overmatch (make-parameter #f))
(define power-user? (make-parameter #f))
(define allow-update?
; "don't set this, it should only be used to keep things in sync with the config"
(make-lexical-parameter))
;; TODO add check to make sure that the python modules are accessible as well
(define terminal-emulator
(begin
#;
(sort (environment-variables-names (current-environment-variables)) bytes<?)
(for/or ([emu '("urxvt"
"xfce4-terminal"
"konsole"
"gnome-terminal"
#; ; here's a nickle kid, go buy yourself a real terminal emulator
"xterm")]
[args (list "-cd" ; urxvt
"--default-working-directory" ; xfce4-terminal
"--workdir" ; konsole
"--working-directory" ; gnome-terminal
#; ; xterm
(lambda (ps) (format "-e 'cd \"~a\"; ~a'" ps (getenv "SHELL"))))])
(let ([ep (find-executable-path emu)])
(and ep (list ep args))))))
(define (unix-vt path-string)
(append terminal-emulator (list path-string)))
(define (win-vt path-string)
(list (find-executable-path "cmd") "/c" "start"
"powershell" "-NoLogo" "-WindowStyle" "normal" "-WorkingDirectory" path-string))
(define (macos-vt path-string)
;; oh the horror ... racket -> osascript -> bash/zsh/whoevenknows
;; and yes, users put single quotes in their dataset names ALL THE TIME AAAAAAAAAAAAAAAAAAAAAAAAA
(let* ([ps (string-replace (string-replace path-string "'" "\\'") "\"" "\\\"")]
[horror (format "tell application \"Terminal\" to do script \"cd '~a'\"" ps)])
(list (find-executable-path "osascript") "-e" horror)))
(define (vt-at-path path [os #f])
(case (or os (system-type))
((unix) (unix-vt path))
((macosx) (macos-vt path))
((windows) (win-vt path))))
;; string constants
(define msg-dataset-not-fetched "Dataset has not been fetched yet!")
(define msg-dataset-not-exported "Dataset has not been exported yet!")
(define msg-no-logs "Dataset has no logs.")
(define missing-var "???")
;; other variables
(define include-keys
; have to filter down due to bad performance in the viewer
; this is true even after other performance improvements
'(id meta rmeta status prov submission))
;; python argvs
(define (python-mod-args module-name . args)
(cons (python-interpreter) (cons "-m" (cons module-name args))))
(define argv-simple-for-racket (python-mod-args "sparcur.simple.utils" "for-racket")) ; FIXME needs --project-id probably
(define (argv-simple-for-racket-meta path-string)
; this is peak LOL PYTHON for slowness on startup which makes this completely non-viable
(parameterize ([python-interpreter
(if (string=? (python-interpreter) "pypy3") ; bad startup time ??? no just LOL PYTHON everywhere
"python"
(python-interpreter))])
(python-mod-args "sparcur.simple.utils" "for-racket" "meta" path-string)))
(define (argv-simple-diff ds)
(python-mod-args "sparcur.simple.utils" "for-racket" "diff"
; "--log-level=-1" ; for debug on cli
(path->string (dataset-working-dir-path ds))))
(define (argv-simple-make-push-manifest ds updated-transitive push-id)
(python-mod-args "sparcur.simple.utils" "for-racket" "make-push-manifest"
(dataset-id ds) updated-transitive push-id (path->string (dataset-working-dir-path ds))))
(define (argv-simple-push ds updated-transitive push-id)
(python-mod-args "sparcur.simple.utils" "for-racket" "push" (dataset-id ds) updated-transitive push-id
(path->string (dataset-working-dir-path ds))))
(define argv-simple-git-repos-update (python-mod-args "sparcur.simple.utils" "git-repos" "update"))
(define argv-spc-export (python-mod-args "sparcur.cli" "export"))
(define (argv-simple-retrieve ds)
(python-mod-args "sparcur.simple.retrieve" "--sparse-limit" "-1"
"--dataset-id" (dataset-id ds)
"--project-id" (dataset-id-project ds)))
(define argv-spc-find-meta
(python-mod-args
"sparcur.cli"
"find"
"--name" "*.xml"
"--name" "submission*"
"--name" "code_description*"
"--name" "dataset_description*"
"--name" "subjects*"
"--name" "samples*"
"--name" "sites*"
"--name" "performances*"
"--name" "manifest*"
"--name" "resources*"
"--name" "README*"
"--limit" "-1"
"--fetch"))
(define (argv-clean-metadata-files ds)
(let ([argv (python-mod-args ; XXX note that this is separate from normalize metadata files
"sparcur.simple.clean_metadata_files"
"--dataset-id" (dataset-id ds))])
(if (power-user?) ; FIXME decouple
(append argv '("--log-level" "DEBUG"))
argv)))
(define (argv-open-dataset-shell ds)
(let ([path (dataset-src-path ds)])
(if (directory-exists? path)
(vt-at-path (dataset-working-dir-path ds))
(begin (println msg-dataset-not-fetched) #f))))
(define (xopen-dataset-latest-log ds)
(let ([latest-log-path (dataset-latest-log-path ds)])
(if latest-log-path
(xopen-path latest-log-path)
(begin (println msg-no-logs) #f))))
(define (argv-download-everything ds)
(python-mod-args
"sparcur.simple.fetch_files"
"--extension" "*"
(dataset-working-dir-path ds)))
(define (argv-open-export-ipython ds)
(let*-values ([(path) (dataset-export-latest-path ds)]
[(parent name dir?) (split-path path)]
[(path-meta-path) (build-path parent "path-metadata.json")]
[(python-code) ; LOL PYTHON can't use with in the special import line syntax SIGH
(format "import json;print('~a');f = open('~a', 'rt');\
blob = json.load(f);f.close();f = open('~a', 'rt');\
path_meta = json.load(f);f.close()"
parent path path-meta-path)])
(if (directory-exists? parent)
(append (unix-vt parent)
(cons "-e" ; FIXME running without bash loses readline somehow
(cons "rlwrap"
(python-mod-args
"IPython"
"-i" "-c"
python-code))))
(begin (println msg-dataset-not-exported) #f))))
(define path-getfattr (find-executable-path "getfattr"))
(define (argv-getfattr path-string) (list path-getfattr "-d" path-string))
;; utility functions
(define --sigh (gensym))
(define (py-system* exe #:set-pwd? [set-pwd? --sigh] . args)
(call-with-environment
(λ ()
(if (eq? set-pwd? --sigh)
(apply system* exe args)
(apply system* exe args #:set-pwd? set-pwd?)))
'(("PYTHONBREAKPOINT" . "0")
; silence error logs during pennsieve top level import issue
("PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION" . "python"))))
(define (tooltip-mixin c)
(if (eq? (system-type 'os*) 'macosx)
(class c ; avoid issues on macos
(init-field [tooltip #f]
[tooltip-delay 500])
(super-new))
(tooltip-mixin-real c)))
(define (datetime-file-system-safe inexact-seconds)
"Y-M-DTHMS,6Z" ; FIXME this is producing garbages results with weird and bad padding
(let ([d (seconds->date inexact-seconds #f)])
(string-join
(map (λ (e) (format "~a" e))
(list
(date-year d)
"-"
(date-month d)
"-"
(date-day d)
"T"
(date-hour d)
(date-minute d)
(date-second d)
","
(inexact->exact (truncate (/ (date*-nanosecond d) 1e3)))
"Z"
))
"")))
#; ; broken due to padding issues above
(define (datetime-for-path-now)
(datetime-file-system-safe
(/ (current-inexact-milliseconds) 1e3)))
(define time-format-friendly "YYYY-MM-dd'T'HHmmss,SSSSSSX")
(define (datetime-for-path-now)
(~t (posix->moment (/ (current-inexact-milliseconds) 1e3) "Etc/UTC") time-format-friendly))
#; ; sigh
(define (in-cwd-thread argv cwd)
; FIXME not quite right because we need to be able to run multiple things in a row
; it would have to be a list of argv cwd pairs or we just use this for the oneoffs
(thread
(thunk
(let ([status #f])
(parameterize ([current-directory cwd])
(values
(with-output-to-string
(thunk (set! status (apply system* argv #:set-pwd? #t))))
status))))))
(define (path->json path)
(let ([path (expand-user-path (if (path? path) path (string->path path)))])
(with-input-from-file path
(λ () (read-json)))))
(define (url->json url)
(call/input-url
(string->url url)
get-pure-port
read-json))
(define (resolve-relative-path path)
"Resolve a symlink to a relative path from the parent folder of the symlink."
; simple-form-path calls path->complete-path internally, which we don't want
; also have to tell simplify-path not to use the file system
(if (link-exists? path)
(path->complete-path (resolve-path path) (simplify-path (build-path path 'up) #f))
(error 'non-existent-path "cannot resolve a non-existent link ~a" path)))
(define (object->methods obj)
(interface->method-names (object-interface obj)))
(define (populate-datasets)
(let* ([pcd (path-cache-datasets)]
[result-projects (if (file-exists? pcd)
(with-input-from-file pcd
(λ () (list (read) (read))))
(begin
(let ([pc-dir (path-cache-dir)])
(unless (directory-exists? pc-dir)
; `make-directory*' will make parents but
; only if pc-dir is not a relative path
(make-directory* pc-dir)))
(let* ([result-projects (get-dataset-project-list)]
[result (car result-projects)]
[projects (cadr result-projects)])
(with-output-to-file pcd
#:exists 'replace ; yes if you run multiple of these you could have a data race
(λ ()
(pretty-write result)
(pretty-write projects)))
; just to confuse everyone
result-projects))
)]
[result (car result-projects)]
[projects (cadr result-projects)]
[datasets (result->dataset-list result)])
(current-projects projects)
(current-datasets datasets)
(set-datasets-view! lview (current-datasets)) ; FIXME TODO have to store elsewhere for search so we
result))
(define (ensure-directory! path-dir)
(unless (directory-exists? path-dir)
(make-directory* path-dir)))
(define (python-module-user-config-path pymod)
(parameterize ([oa-current-auth-config-path (python-mod-auth-config-path pymod)])
(oa-user-config-path)))
(define (init-paths!)
"initialize or reset the file system paths to cache, export, and source directories"
; FIXME 'cache-dir is NOT what we want for this as it is ~/.racket/
; FIXME more cryptic errors if sparcur.simple isn't tangled
; FIXME it should be possible for the user to configure path-source-dir
(parameterize ([oa-current-auth-config-path (python-mod-auth-config-path "sparcur")])
(define ac (oa-read-auth-config))
(path-config (build-path (expand-user-path (user-config-path "sparcur")) "viewer.rktd"))
; FIXME sppsspps stupidity
(path-source-dir (expand-user-path ; redundant but avoids #f contract violation
(or (oa-get-path ac 'data-path #:exists? #f)
(build-path (find-system-path 'home-dir) "files" "sparc-datasets"))))
(path-log-dir (build-path
(expand-user-path
(or (oa-get-path ac 'log-path #:exists? #f)
(user-log-path "sparcur")))
"datasets"))
(path-cache-dir (build-path
(expand-user-path
(or (oa-get-path ac 'cache-path #:exists? #f)
(user-cache-path "sparcur")))
"racket"))
(path-cache-push
(build-path ; must match python or sparcur.simple.utils won't be able to find {push-id}/paths.sxpr
(expand-user-path
(or (oa-get-path ac 'cache-path #:exists? #f)
(user-cache-path "sparcur")))
"push"))
(path-cache-datasets (build-path (path-cache-dir) "datasets-list.rktd"))
(path-cleaned-dir (expand-user-path
(or (oa-get-path ac 'cleaned-path #:exists? #f)
(user-data-path "sparcur" "cleaned"))))
(path-export-dir (expand-user-path
(or (oa-get-path ac 'export-path #:exists? #f)
(user-data-path "sparcur" "export"))))
(path-export-datasets (build-path (path-export-dir) "datasets"))))
(define (save-config!)
(with-output-to-file (path-config)
#:exists 'replace
(λ () (pretty-write
(list
(cons 'viewer-mode (or viewer-mode-state 0)) ; avoid contract violation if saved when viewer-mode is #f
(cons 'power-user? (power-user?))
)))))
(define (*->string maybe-string)
(cond
[(symbol? maybe-string) (symbol->string maybe-string)]
[(number? maybe-string) (number->string maybe-string)]
[(keyword? maybe-string) (keyword->string maybe-string)]
[(path? maybe-string) (path->string maybe-string)]
[(boolean? maybe-string) (format "~a" maybe-string)]
[(string? maybe-string) maybe-string]
[else (error '*->string "unknown object type ~s" maybe-string)]))
(define (load-config!)
; TODO various configuration options
(parameterize ([oa-current-auth-config-path (python-mod-auth-config-path "sparcur")])
(define config (oa-read-auth-config))
(let ([org (oa-get config 'remote-organization)] ; TODO make sure in orgs
[orgs (oa-get config 'remote-organizations)]
[never-update (oa-get config 'never-update)])
(allow-update? (not never-update))
(send menu-item-update-viewer enable (allow-update?))
(let* ([pc (path-config)]
[cfg (if (and pc (file-exists? pc))
(with-input-from-file pc
(λ ()
(read)))
'())])
(define (obfus str [ends 4])
(let ([ls (string-length str)])
(string-append
(substring str 0 ends)
(make-string (- ls (* 2 ends)) #\*)
(substring str (- ls ends) ls))))
; FIXME very confusing error message if there is no value for org in sparcur config (i.e. it is #f)
(send choice-prefs-remote-organization clear)
(let ([rok '()])
(for ([o (or orgs (list org))])
; FIXME TODO append org name
(send choice-prefs-remote-organization append (*->string o))
(set! rok
(cons
(cons
; FIXME confusing error message from a make-string contract if the key or secret are too short
(obfus (*->string (oa-get-sath 'pennsieve o 'key)))
(obfus (*->string (oa-get-sath 'pennsieve o 'secret))))
rok)))
(send choice-prefs-remote-organization set-selection 0) ; reset selection to avoid stale ?
(remote-org-keys (reverse rok))
(cb-select-remote-org choice-prefs-remote-organization #f))
#;
(send text-prefs-path-? set-value "egads")
(send text-prefs-path-config set-value (path->string (path-config)))
(send text-prefs-path-user-config set-value (oa-user-config-path))
(send text-prefs-path-idlib-cfg set-value (python-module-user-config-path "idlib"))
(send text-prefs-path-ontqu-cfg set-value
(python-module-user-config-path "ontquery.plugins.services"))
(send text-prefs-path-pyont-cfg set-value (python-module-user-config-path "pyontutils"))
(send text-prefs-path-secrets set-value (oa-secrets-path))
(send text-prefs-path-data set-value (path->string (path-source-dir)))
(send text-prefs-path-logs set-value (path->string (path-log-dir)))
(let* ([config-exists (assoc 'viewer-mode cfg)]
[power-user-a (assoc 'power-user? cfg)]
[power-user (and power-user-a (cdr power-user-a))])
(if config-exists
(begin
; set-selection does not trigger the callback
(send radio-box-viewer-mode set-selection
; prevent contract violation of viewer-mode was somehow #f when config was written
(or (cdr config-exists) 0))
(cb-viewer-mode radio-box-viewer-mode #f)
(power-user? (not power-user))
; cb does the toggle interinally so we set the opposite of what we want first
(cb-power-user check-box-power-user #f))
(set-current-mode-panel! panel-validate-mode)))
(send frame-preferences refresh)))))
(define refresh-dataset-metadata-semaphore (make-semaphore 1))
(define (refresh-dataset-metadata text-search-box)
; XXX requries python sparcur to be installed
(call-with-semaphore
refresh-dataset-metadata-semaphore
(thunk
(dynamic-wind
(thunk (send button-refresh-datasets enable #f))
(thunk
(let* ([result-projects (get-dataset-project-list)]
[result (car result-projects)]
[projects (cadr result-projects)]
[datasets (result->dataset-list result)]
[unfiltered? (= 0 (string-length (string-trim (send text-search-box get-value))))])
(current-projects projects)
(current-datasets datasets)
(if unfiltered?
(call-with-semaphore
jview-semaphore
(thunk ; needed to prevent attemts to modify an empty lview from on-subwindow-char
(set-datasets-view! (send text-search-box list-box) (current-datasets))))
(cb-search-dataset text-search-box #f))
(println "dataset metadata has been refreshed") ; TODO gui viz on this (beyond updating the number)
(with-output-to-file (path-cache-datasets)
#:exists 'replace ; yes if you run multiple of these you could have a data race
(λ ()
(pretty-write result)
(pretty-write projects)))))
(thunk (send button-refresh-datasets enable #t))))))
(define (get-path-err)
(hash-ref
(hash-ref
(current-blob)
'status
(hash))
'path_error_report
#f))
(define ok-ws '(#\space #\newline))
(define (render-ws char)
(cond
[(char=? char #\tab) '(#\\ #\t)]
;[(char=? char #\Newline) '(#\\ #\n)]
[else (cons #\\ (cons #\x (string->list (number->string (char->integer char) 16))))]))
(define (expand-abnormal-whitespace str)
; FIXME horribly inefficient
; TODO apparently text extents can have style<%> ? will have to review
; i know it can be done using a draw context directly ...
(let ([l '()]
[hit #f])
(for ([char (in-string str)])
(if (and (char-whitespace? char)
(not (for/or ([wsc (in-list ok-ws)])
; basically anything not a space or newline is evil
; newline is evil too, but is present in the target text
(char=? wsc char))))
(begin
(set! hit #t)
(for ([char-char (in-list (render-ws char))])
(set! l (cons char-char l))))
(set! l (cons char l))))
(if hit
(list->string (reverse l))
str)))
(define (paths-report)
(for-each (λ (m)
(displayln
(expand-abnormal-whitespace
(regexp-replace #rx"SPARC( Consortium)?/[^/]+/" m "\\0\n")))
(newline))
; FIXME use my hr function from elsewhere
(let ([ihr (get-path-err)])
(if ihr
(hash-ref (hash-ref ihr '|#/specimen_dirs| #hash((messages . ()))) 'messages)
'()))))
(define (manifest-report)
; FIXME this will fail if one of the keys isn't quite right
; TODO displayln this into a text% I think?
(for-each (λ (m)
(displayln
(expand-abnormal-whitespace
(regexp-replace #rx"SPARC( Consortium)?/[^/]+/" m "\\0\n")))
(newline))
; FIXME use my hr function from elsewhere
(let ([ihr (get-path-err)])
(if ihr
(hash-ref (hash-ref ihr '|#/path_metadata/-1| #hash((messages . ()))) 'messages)
'()))))
(define (current-json-view-text)
; TODO consider jsexpr->pretty-json
(display (jsexpr->string (current-blob) #:indent 2)))
;; update viewer
(define (update-viewer)
"stash and pull all git repos, rebuild the viewer"
;; FIXME the menu option should be disabled if on a system where this is broken/banned
; find the git repos
;; XXX for upgrading python/racket from setup.org we need PYROOTS and RKTROOTS
;; and then REPOS, see specifically clone-repos and python-setup
;; XXX also bug where [email protected]:org/repo.git was used but no key is available
(if (or update-running? (not (allow-update?)))
(println
(if update-running?
"Update is already running!"
"User config is set to never allow update (e.g. because this is a development system)."))
(begin
(set! update-running? #t)
(thread
(thunk
(dynamic-wind
(λ () #t)
(thunk
(println "Update starting ...")
(let ([exec-file (path->string (find-system-path 'exec-file))]
[raco-exe (path->string (find-executable-path "raco"))] ; XXX SIGH
[status
(parameterize ()
(apply py-system* argv-simple-git-repos-update))])
; TODO pull changes for racket dependent repos as well
; TODO raco pkg install local git derived packages as well
(println (format "running raco pkg update ~a" this-package-path))
(let ([mtime-before (file-or-directory-modify-seconds
this-file-compiled
#f
(λ () -1))])
(parameterize ()
(system* raco-exe "pkg" "update" "--batch" this-package-path)
#;
(system* raco-exe "make" "-v" this-file))
#; ; raco exe issues ... i love it when abstractions break :/
(parameterize ([current-command-line-arguments
(vector "--vv" this-file)])
(dynamic-require 'compiler/commands/make #f))
#;
(system* exec-file "-l-" "raco/main.rkt" "make" "--vv" "--" this-file)
(let ([mtime-after (file-or-directory-modify-seconds
this-file-compiled
#f
(λ () -2))])
(when (not (= mtime-before mtime-after))
(println (format "running raco exe -v -o ~a ~a "
this-file-exe this-file))
(parameterize ()
(when (file-exists? this-file-exe)
(rename-file-or-directory this-file-exe this-file-exe-tmp))
(system* raco-exe "exe" "-v" "-o" this-file-exe this-file)
(unless (file-exists? this-file-exe) ; restore the old version on failure
(when (file-exists? this-file-exe-tmp)
(rename-file-or-directory this-file-exe-tmp this-file-exe))))
#; ; this is super cool but an eternal pain for raco exe
(parameterize ([current-command-line-arguments
(vector
"++lib" "compiler/commands/make"
"++lib" "compiler/commands/exe"
"++lib" "racket/lang/reader"
"--vv" this-file)])
(dynamic-require 'compiler/commands/exe #f))
#;
(system* exec-file "-l-" "raco/main.rkt" "exe" "--vv" "--" this-file)))))
(println "Update complete!")
#; ; TODO issue this only if the viewer itself was updated and there was a success
(println "Restart at your convenience.")
)
(λ () (set! update-running? #f))))))))
;; json view
(define-syntax when-not (make-rename-transformer #'unless))
(define (apply-items-rec function item)
;(pretty-print item)
(when (function item)
(let* ([sub-items (send item get-items)])
(for [(sub-item sub-items)] (apply-items-rec function sub-item)))))
(define (do-open item)
; FIXME still slow
(let*-values ([(ud) (send item user-data)]
[(type name) (values (node-data-type ud) (node-data-name ud))])
#;
(pretty-print (list (node-data-type ud) (node-data-name ud) (node-data-value ud)))
(and (or (eq? type 'hash)
(and
(eq? type 'list)
(not (memq name ; filter cases that are v slow to open
'(; FIXME hardcoded
synonyms
curation_errors
unclassified_errors
submission_errors
unclassified_stages
)))))
(send item open))))
(define (set-jview-json! jview json)
"set the default state for jview"
(define jhl (get-field json-hierlist jview))
(define old-root (get-field root jhl))
(when old-root
; this is safe because we force selection at startup
; strangely this code this makes the interface less jerky when scrolling quickly
(send jhl delete-item old-root))
(send jview set-json! json)
(define root (get-field root jhl))
(send jhl sort json-list-item< #t)
#;
(send root open)
; can't thread this because some part of it is not thread safe
(apply-items-rec do-open root)
(send jhl scroll-to 0 0 0 0 #t)
#;
(define (by-name name items)
(let ([v (for/list ([i items]
#:when (let ([ud (send i user-data)])
(and (eq? (node-data-type ud) 'hash)
(eq? (node-data-name ud) name))))
i)])
(and (not (null? v)) (car v))))
#;
(let ([ritems (send root get-items)])
(when (> (length ritems) 1) ; id alone is length 1
(map (λ (x)
(let ([ud (send x user-data)])
(when (and (eq? (node-data-type ud) 'hash)
(memq (node-data-name ud) '(meta submission status))) ; FIXME hardcoded
(when-not (null? (send x get-items)) ; compound item
(send x open))
(when (eq? (node-data-name ud) 'status)
(let ([per (by-name 'path_error_report (send x get-items))])
(when per
(send per open)))))))
ritems))))
; reminder, use uuids as keys because the struct hash changes when the dataset list is refreshed
(define jviews (make-hash))
(define uuid-json-hash (make-hash))
(define (dataset-jview! dataset #:update [update #f])
(let* ([uuid (id-uuid dataset)]
[hr-jview (hash-ref jviews uuid #f)]
[jview
(if (and hr-jview (not update))
(begin
hr-jview)
(letrec ([hier-class json-hierlist%
#; ; too slow when doing recursive opens
(class json-hierlist% (super-new)
(rename-super [super-on-item-opened on-item-opened])
(define/override (on-item-opened item)
(define root (get-field json-hierlist jview-inner))
#;
(define-values (x y w h)
(values
(send root get-x)
(send root get-y)
(send root get-width)
(send root get-height)))
(super-on-item-opened item)
(send root sort json-list-item< #t)
#; ; this isn't working as a way to stabilize the position of the buffer
; when we get to the end of its content, which is the classic and
; monumentally stupid behavior of most gui toolkits, not clear what can
; be done about this
; XXX the behavior is worse on-item-close so maybe a solution there
(send root scroll-to x y w h #t)))]
[jview-inner
(or (and update hr-jview)
(new json-view%
[hier-class% hier-class]
;;[font (make-object font% 10 'modern)]
[parent frame-helper]))])
(let* ([lp (dataset-export-latest-path dataset)]
[json (if lp (path->json lp)
(hash
'id (dataset-id dataset)
'meta (hash
'id-project (id-project dataset)
'folder_name (dataset-title dataset)
'owner (dataset-pi-name-lf dataset)
'updated (dataset-updated dataset))))]
[jhash (for/hash ([(k v) (in-hash json)]
; FIXME I think we don't need include keys anymore
; XXX false, there are still performance issues
#:when (member k include-keys))
(values k v))])
(hash-set! jviews uuid jview-inner)
(when lp
(hash-set! uuid-json-hash uuid json))
(set-jview-json! jview-inner jhash)
jview-inner)))])
jview))
(define (unset-current-jview)
(let ([old-jview (current-jview)])
(when old-jview
(send old-jview reparent frame-helper)
(current-jview #f))))
(define jviews-loading (set))
(define jview-semaphore (make-semaphore 1))
(define (set-jview! dataset)
(let ([uuid (id-uuid dataset)])
; unset-current-jview is safe to call unconditionally because even
; if we can't draw the jview for the new dataset we definitely should
; stop drawing the jview for the most recently deselected dataset
(unset-current-jview)
; when scrolling fast back and forth don't try to load the same jview multiple times
(unless (set-member? jviews-loading uuid)
(set! jviews-loading (set-add jviews-loading uuid))
; setting current dataset must be called in the main thread so that
; curent-dataset is always guranteed to be synchronized with the gui view ...
; setting current dataset is called with a semaphore becuase I have seen one freak case
; where a hang resulted in the double jview behavior, I have tested with this and not
; seen it happen again, however that doesn't mean much, in principle this should block
; the main thread from proceeding until the fast part of the thread below is done which
; in principle should ensure fully sequential behavior, but that's just the theory
(unless (and (current-dataset) (string=? (id-uuid dataset) (id-uuid (current-dataset))))
; we also set current-dataset in the lview on-subwindow-char to keep lview state synced
(call-with-semaphore
jview-semaphore
(thunk (current-dataset dataset)))) ; XXX this is one of two places current-dataset should ever be set
(thread
(thunk ; we thread because dataset-jview! can be quite slow for large json blobs
(let ([jview (dataset-jview! dataset)])
; we're done loading so if you want to load again knock yourself out
(set! jviews-loading (set-remove jviews-loading uuid))
; we must use a semaphore here because if you have two consecutive events
; that are very close together in time the exact ordering of the threads
; they spawn can result in a case where (is-current? a) will be called and
; return true before (current-dataset b) is called and (reparent a) is called
; after (b-unparent) is called, said another way, the call to unset-current-jview
; in in main thread for b can fall between the call (is-current? a) and (reparent a)
; in the a subthread, the semaphore ensures that even if this happens that the call
; to unset-current-jview in b will unparent a because b's reparent cannot start until
; after a's finishes in the case where b's unset has been called between ica and ra (confusing I know)
(call-with-semaphore
jview-semaphore
(thunk
(when (string=? uuid (id-uuid (current-dataset)))
; even with the semaphore there is a chance that another thread snuck in and set itself while
; this one was working so we unset the current jview again here otherwise we periodically get two jviews
(unset-current-jview)
(send jview reparent panel-right)
(current-jview jview)
; we call set-button-status-for-dataset in the jview thread after dataset-jview!
; returns because setting buttons correctly depends uuid-json-hash having been
; populated which happens in dataset-jview! thus if set-button-status-for-dataset
; is called in the main thread uuid-json-hash may not have been populated and we
; get unexpected results
(set-button-status-for-dataset dataset)))))))
)))
;; dataset struct and generic functions
(define-generics ds
(populate-list ds list-box)
(lb-cols ds)
(lb-data ds)
(updated-short ds)
(id-short ds)
(id-uuid ds)
(id-project ds)
(uri-human ds)
(uri-sds-viewer ds)
(dataset-src-path ds)
(dataset-working-dir-path ds)
(dataset-log-path ds)
(dataset-latest-log-path ds)
(dataset-export-latest-path ds)
(dataset-cleaned-latest-path ds)
(dataset-project-name ds)
(fetch-export-dataset ds)
(fetch-dataset ds)
(clean-metadata-files ds)
(load-remote-json ds)
(export-dataset ds)
(is-current? ds))
(struct dataset (id title updated pi-name-lf id-project publication-status)
#:methods gen:ds
[(define (populate-list ds list-box)
; FIXME annoyingly it looks like these things need to be set in
; batch in order to get columns to work
(send list-box append
(list
(dataset-pi-name-lf ds)
(dataset-title ds)
(id-short ds)
(updated-short ds)
(dataset-publication-status ds))
ds))
(define (lb-cols ds)
(list
(dataset-pi-name-lf ds)
(let ([dt (dataset-title ds)]) ; must meet label-string? requirements
(if (<= (string-length dt) 200)
dt
(string-append (substring dt 0 196) " ...")))
(id-short ds)
(updated-short ds)
(dataset-publication-status ds)))
(define (lb-data ds)
; TODO we may want to return more stuff here
ds)
(define (dataset-project-name ds)
(cadr (assoc (dataset-id-project ds) (current-projects))))
(define (dataset-export-latest-path ds)
(let* ([uuid (id-uuid ds)]
[lp (build-path (path-export-datasets)
uuid "LATEST" "curation-export.json")]
#;
[asdf (println lp)]
[qq (and (file-exists? lp) (resolve-path lp))])
; FIXME not quite right?
qq))
(define (dataset-cleaned-latest-path ds)
(let* ([uuid (id-uuid ds)]
[lp (build-path (path-cleaned-dir)
uuid "LATEST")]
[qq (and (directory-exists? lp) ; sigh, paths are hard
(build-path (path-cleaned-dir) uuid (resolve-path lp)))])
qq))
(define (dataset-src-path ds)
(let ([uuid (id-uuid ds)])
(build-path (path-source-dir) uuid)))
(define (dataset-working-dir-path ds)
(let ([path (dataset-src-path ds)])
(if (directory-exists? path)
(resolve-relative-path (build-path path "dataset"))
(error msg-dataset-not-fetched))))
(define (dataset-log-path ds)
(let ([uuid (id-uuid ds)])
(build-path (path-log-dir) uuid)))
(define (dataset-latest-log-path ds)
(define lp (build-path (dataset-log-path ds) "LATEST/stdout.log"))
(and (file-exists? lp) (resolve-path lp)))
(define (fetch-dataset ds)
(println (format "dataset fetch starting for ~a" (dataset-id ds))) ; TODO gui and/or log
(let ([cwd-1 (path-source-dir)]
[cwd-2 (build-path (dataset-src-path ds)
; FIXME dataset here is hardcoded
"dataset")]
[argv-1 (argv-simple-retrieve ds)]
[argv-2 argv-spc-find-meta])
(thread
(thunk
(let ([status-1 #f]
[status-2 #f])
(ensure-directory! cwd-1)
(parameterize ([current-directory cwd-1])
(with-output-to-string (thunk (set! status-1
(apply py-system* argv-1 #:set-pwd? #t)))))
(parameterize ([current-directory (resolve-relative-path cwd-2)])
(with-output-to-string (thunk (set! status-2
(apply py-system* argv-2 #:set-pwd? #t)))))
(when status-1
(set-button-status-for-dataset ds)
(post-fetch-for-dataset ds))
(if (and status-1 status-2)
(println (format "dataset fetch completed for ~a" (dataset-id ds)))
(println (format "dataset fetch FAILED for ~a" (dataset-id ds)))))))))
(define (export-dataset ds)
(println (format "dataset export starting for ~a" (dataset-id ds))) ; TODO gui and/or log
(let ([cwd-2 (build-path (dataset-src-path ds)
; FIXME dataset here is hardcoded
"dataset")]
[argv-3 (append argv-spc-export '("--fill-cache-metadata"))]) ; fill cache metadata in case a file was modified and xattrs were lost
(thread
(thunk
(let ([status-3 #f]
[cwd-2-resolved (resolve-relative-path cwd-2)])
(parameterize ([current-directory cwd-2-resolved])
(with-output-to-string (thunk (set! status-3
(apply py-system* argv-3 #:set-pwd? #t)))
))
(if status-3
(begin
(dataset-jview! ds #:update #t)
(println (format "dataset export completed for ~a" (dataset-id ds))))
(println (format "dataset export FAILED for ~a" (dataset-id ds)))))))))
(define (fetch-export-dataset ds)
(println (format "dataset fetch and export starting for ~a" (dataset-id ds))) ; TODO gui and/or log
(let ([cwd-1 (path-source-dir)]
; we can't resolve-path on cwd-2 here because it
; may not exist or it may point to a previous release
[cwd-2 (build-path (dataset-src-path ds)
; FIXME dataset here is hardcoded
"dataset")]
[dataset-log-path-now (build-path (dataset-log-path ds) (datetime-for-path-now) "stdout.log")]
[argv-1 (argv-simple-retrieve ds)]
[argv-2 argv-spc-find-meta]
[argv-3 argv-spc-export])
(let*-values ([(date-path _ __) (split-path dataset-log-path-now)]
[(uuid-path local-date-path __) (split-path date-path)]
[(latest-path) (build-path uuid-path "LATEST")])
(ensure-directory! uuid-path)
(ensure-directory! date-path)
(when (link-exists? latest-path)
(delete-file latest-path))
(make-file-or-directory-link local-date-path latest-path))
(thread
(thunk
(let ([status-1 #f]
[status-2 #f]
[status-3 #f])
(ensure-directory! cwd-1)
(parameterize ([current-directory cwd-1])
#;