Merge pull request #355 from kedhammar/ont-logbooks

Implement ONT logbooks

VERSIONLOG.md

@@ -1,5 +1,10 @@
 # Scilifelab_epps Version Log
 
+
+## 20240910.3
+
+Add logbook for PromethION and MinION.
+
 ## 20240910.2
 
 Support both single lane and dual lane of AVITI flowcell

data/logbook_data.py

@@ -351,6 +351,15 @@
             "details": ["Processname"],
         },
     },
+    "ONT Start Sequencing v3.0": {
+        "lims_instrument": {
+            "dest_file": "MinION-PromethION",
+            "details": [
+                "Processname",
+                "LIMS ID (Process)",
+            ],
+        },
+    },
     "ONT QC Adapter Ligation v1.2": {
         "lims_instrument": {
             "dest_file": "Qubit",
@@ -369,6 +378,15 @@
             "details": ["Assay", "Lot no: Qubit kit"],
         },
     },
+    "ONT QC Start Sequencing": {
+        "lims_instrument": {
+            "dest_file": "MinION-PromethION",
+            "details": [
+                "Processname",
+                "LIMS ID (Process)",
+            ],
+        },
+    },
     "PCR1 (Amplicon)": {
         "lims_instrument": {"dest_file": "Bravo", "details": ["Processname"]},
         "udf_PCR machine": {"dest_file": "PCR"},
@@ -556,4 +574,5 @@
     "Speedvac": {"File": "1Dk7qPJeNmzKtHWEdNkZ4yLB0FycjREqqIhNhInZ8G9g"},
     "Tecan": {"File": "1DUBEL8DBf0lnXJjIIjowQf2PrftMo9ECXpeNrDodM4s"},
     "VC100": {"File": "1FEH2Ilyaz2FThJZ_jjlDna7s4aTuRgfxvLFpYgOPHBw"},
+    "MinION-PromethION": {"File": "1OazL3MNZImTJBHK-QVy-jbxL9nN1uCoOmOMSiXclRac"},
 }

scripts/logbook_service_account.py

@@ -24,7 +24,7 @@
 SCOPES = ["https://www.googleapis.com/auth/spreadsheets"]
 SERVICE_ACCOUNT_FILE = "/opt/gls/clarity/users/glsai/.credentials/ngi-lims-epp-001.json"
 
-# In coordinates, the values correspond to LineID of the header, columns for date, operator, instrument name and details. The sheet name shoud be "Logbook"
+# In coordinates, the values correspond to LineID of the header, columns for date, operator, instrument name and details. The sheet name should be "Logbook"
 LOGBOOK_COORDINATES = [22, "B", "C", "D", "E"]