sort samples section by name and lane

SciLifeLab · Aug 27, 2024 · 5b0ca7b · 5b0ca7b
1 parent 52664a9
commit 5b0ca7b
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/scripts/generate_aviti_run_manifest.py b/scripts/generate_aviti_run_manifest.py
@@ -140,6 +140,7 @@ def get_samples_section(process: Process) -> str:
         all_rows.extend(lane_rows)
 
     df = pd.DataFrame(all_rows)
+    df.sort_values(by=["SampleName", "Lane"], inplace=True)
 
     samples_section = f"[SAMPLES]\n{df.to_csv(index=None, header=True)}"