run prettier

.github/pr_labels.yml

@@ -1,4 +1,4 @@
-version: '1'
+version: "1"
 invalidStatus: "pending"
 labelRule:
   values:

.github/workflows/lint-code.yml

@@ -7,7 +7,6 @@ concurrency:
   cancel-in-progress: true
 
 jobs:
-
   # Use ruff to check for code style violations
   ruff-check:
     runs-on: ubuntu-latest
@@ -73,11 +72,11 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v4
         with:
-          python-version: '3.10'
+          python-version: "3.10"
 
       - name: Install pipreqs
         run: pip install pipreqs
-      
+
       - name: Install requirements
         run: pip install -r requirements.txt
 
@@ -134,5 +133,3 @@ jobs:
 
       - name: editorconfig --> Lint files
         run: editorconfig-checker $(git ls-files | grep -v 'test\|.py\|.md\|.json\|.yml\|.yaml\|.html')
-
-

.pre-commit-config.yaml

@@ -1,18 +1,19 @@
 # .pre-commit-config.yaml
 repos:
--   repo: https://github.com/astral-sh/ruff-pre-commit
+  - repo: https://github.com/astral-sh/ruff-pre-commit
     rev: v0.1.6
     hooks:
-    -   id: ruff
-    -   id: ruff-format
--   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: 'v1.7.1'
+      - id: ruff
+      - id: ruff-format
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: "v1.7.1"
     hooks:
-    -   id: mypy
-        additional_dependencies: [
+      - id: mypy
+        additional_dependencies:
+          [
             types-Markdown,
             types-PyYAML,
             types-requests,
             types-setuptools,
             types-tabulate,
-        ]
+          ]

README.md

@@ -4,7 +4,7 @@ Collection of EPPs for the Scilifelab Stockholm node.
 
 Table of contents
 
-- [scilifelab\_epps](#scilifelab_epps)
+- [scilifelab_epps](#scilifelab_epps)
   - [Overview](#overview)
   - [Installation](#installation)
   - [Development](#development)

data/QC_criteria.json

@@ -184,7 +184,7 @@
         }
     },
     "Finished library (by user)": {
-        "MiSeq":{
+        "MiSeq": {
             "default": {
                 "default": {
                     "Concentration": 2,
@@ -208,7 +208,7 @@
                     "Concentration": 2,
                     "Volume (ul)": 110
                 },
-                "XP clustering":{
+                "XP clustering": {
                     "Concentration": 1.5,
                     "Volume (ul)": 25
                 }
@@ -218,7 +218,7 @@
                     "Concentration": 2,
                     "Volume (ul)": 160
                 },
-                "XP clustering":{
+                "XP clustering": {
                     "Concentration": 1.5,
                     "Volume (ul)": 30
                 }
@@ -228,7 +228,7 @@
                     "Concentration": 2,
                     "Volume (ul)": 320
                 },
-                "XP clustering":{
+                "XP clustering": {
                     "Concentration": 1.5,
                     "Volume (ul)": 35
                 }