Broaden anglerfish run search #304
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related SciLifeLab/TACA#409 |
alneberg
reviewed
Jan 29, 2024
| @@ -35,7 +35,7 @@ def find_latest_flowcell_run(currentStep: Process) -> str: | |||
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| def find_latest_anglerfish_run(latest_flowcell_run_path: str) -> str: | |||
| anglerfish_query = f"{latest_flowcell_run_path}/*anglerfish_run*" | |||
| anglerfish_query = f"{latest_flowcell_run_path}/**/anglerfish_run*" | |||
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I belive the double asterisk is sort of a special feature of some shells, have you tested this on the LIMS server?
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Tried it now
In [6]: p="repos/**/scripts"
In [7]: from glob import glob
In [8]: pwd
Out[8]: '/opt/gls/clarity/users/glsai'
In [9]: glob(p)
Out[9]: ['repos/scilifelab_epps/scripts']
Seems to work :)
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