build based on 1e4495f

SciML · Jun 28, 2024 · 1feb4dd · 1feb4dd
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diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json
@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-06-21T08:57:00","documenter_version":"1.4.1"}}
+{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-06-28T08:56:38","documenter_version":"1.4.1"}}
diff --git a/dev/assets/Manifest.toml b/dev/assets/Manifest.toml
@@ -5,9 +5,9 @@ manifest_format = "2.0"
 project_hash = "22ff5a0bf52029bad32356c8a808b24e6af8d6af"
 
 [[deps.ADTypes]]
-git-tree-sha1 = "fc02d55798c1af91123d07915a990fbb9a10d146"
+git-tree-sha1 = "fa0822e5baee6e23081c2685ae27265dabee23d8"
 uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
-version = "1.3.0"
+version = "1.4.0"
 weakdeps = ["ChainRulesCore", "EnzymeCore"]
 
     [deps.ADTypes.extensions]
@@ -272,9 +272,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
-git-tree-sha1 = "37d49a1f8eedfe68b7622075ff3ebe3dd0e8f327"
+git-tree-sha1 = "2c6b7bf16fd850c551a765e313e7522ba455cbfd"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.151.2"
+version = "6.151.4"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseCUDAExt = "CUDA"
@@ -987,9 +987,9 @@ version = "1.2.0"
 
 [[deps.NonlinearSolve]]
 deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"]
-git-tree-sha1 = "ed5500c66b726ec9fe8c1796c0a600353246ecf8"
+git-tree-sha1 = "40325dcea1cb84a108efe05966bbb1f4b98e5eea"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "3.12.4"
+version = "3.13.0"
 
     [deps.NonlinearSolve.extensions]
     NonlinearSolveBandedMatricesExt = "BandedMatrices"
@@ -1055,9 +1055,9 @@ version = "1.6.3"
 
 [[deps.OrdinaryDiffEq]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
-git-tree-sha1 = "3ae298de8045aeaed80a992074d473b040a5b9cd"
+git-tree-sha1 = "b4cde20f0e8c67fd35863794d5e548722f7bb71d"
 uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
-version = "6.83.1"
+version = "6.84.0"
 
 [[deps.PCRE2_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -1463,9 +1463,9 @@ version = "7.2.1+1"
 
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"]
-git-tree-sha1 = "9bda3c1e2b771ab45fcbc264a078f612ca7ef427"
+git-tree-sha1 = "a5f6f138b740c9d93d76f0feddd3092e6ef002b7"
 uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
-version = "0.3.23"
+version = "0.3.22"
 
 [[deps.SymbolicLimits]]
 deps = ["SymbolicUtils"]

diff --git a/dev/index.html b/dev/index.html
@@ -22,7 +22,7 @@
   LIBM: libopenlibm
   LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
 Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)</code></pre></details><details><summary>A more complete overview of all dependencies and their versions is also provided.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/work/CellMLToolkit.jl/CellMLToolkit.jl/docs/Manifest.toml`
-  [47edcb42] ADTypes v1.3.0
+  [47edcb42] ADTypes v1.4.0
   [a4c015fc] ANSIColoredPrinters v0.0.1
   [1520ce14] AbstractTrees v0.4.5
   [7d9f7c33] Accessors v0.1.36
@@ -54,7 +54,7 @@
   [9a962f9c] DataAPI v1.16.0
   [864edb3b] DataStructures v0.18.20
   [e2d170a0] DataValueInterfaces v1.0.0
-  [2b5f629d] DiffEqBase v6.151.2
+  [2b5f629d] DiffEqBase v6.151.4
 ⌅ [459566f4] DiffEqCallbacks v2.37.0
   [163ba53b] DiffResults v1.1.0
   [b552c78f] DiffRules v1.15.1
@@ -65,7 +65,7 @@
   [e30172f5] Documenter v1.4.1
 ⌅ [5b8099bc] DomainSets v0.6.7
   [fa6b7ba4] DualNumbers v0.6.8
-  [7c1d4256] DynamicPolynomials v0.5.7
+⌅ [7c1d4256] DynamicPolynomials v0.5.7
   [4e289a0a] EnumX v1.0.4
   [f151be2c] EnzymeCore v0.7.5
   [d4d017d3] ExponentialUtilities v1.26.1
@@ -127,10 +127,10 @@
   [d41bc354] NLSolversBase v7.8.3
   [2774e3e8] NLsolve v4.5.1
   [77ba4419] NaNMath v1.0.2
-  [8913a72c] NonlinearSolve v3.12.4
+  [8913a72c] NonlinearSolve v3.13.0
   [6fe1bfb0] OffsetArrays v1.14.0
   [bac558e1] OrderedCollections v1.6.3
-  [1dea7af3] OrdinaryDiffEq v6.83.1
+  [1dea7af3] OrdinaryDiffEq v6.84.0
   [90014a1f] PDMats v0.11.31
   [65ce6f38] PackageExtensionCompat v1.0.2
   [d96e819e] Parameters v0.12.3
@@ -145,7 +145,7 @@
   [1fd47b50] QuadGK v2.9.4
   [e6cf234a] RandomNumbers v1.5.3
   [3cdcf5f2] RecipesBase v1.3.4
-  [731186ca] RecursiveArrayTools v3.23.1
+⌃ [731186ca] RecursiveArrayTools v3.23.1
   [f2c3362d] RecursiveFactorization v0.2.23
   [189a3867] Reexport v1.2.2
   [2792f1a3] RegistryInstances v0.1.0
@@ -174,7 +174,7 @@
   [2913bbd2] StatsBase v0.34.3
   [4c63d2b9] StatsFuns v1.3.1
   [7792a7ef] StrideArraysCore v0.5.6
-  [2efcf032] SymbolicIndexingInterface v0.3.23
+  [2efcf032] SymbolicIndexingInterface v0.3.22
   [19f23fe9] SymbolicLimits v0.2.1
 ⌅ [d1185830] SymbolicUtils v1.5.1
 ⌃ [0c5d862f] Symbolics v5.28.0
@@ -251,4 +251,4 @@
   [8e850b90] libblastrampoline_jll v5.8.0+1
   [8e850ede] nghttp2_jll v1.52.0+1
   [3f19e933] p7zip_jll v17.4.0+2
-Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`</code></pre></details><p>You can also download the <a href="https://github.com/SciML/CellMLToolkit.jl/tree/gh-pages/v2.11.0/assets/Manifest.toml">manifest</a> file and the <a href="https://github.com/SciML/CellMLToolkit.jl/tree/gh-pages/v2.11.0/assets/Project.toml">project</a> file.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="tutorial/">Tutorial »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Friday 21 June 2024 08:56">Friday 21 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`</code></pre></details><p>You can also download the <a href="https://github.com/SciML/CellMLToolkit.jl/tree/gh-pages/v2.11.0/assets/Manifest.toml">manifest</a> file and the <a href="https://github.com/SciML/CellMLToolkit.jl/tree/gh-pages/v2.11.0/assets/Project.toml">project</a> file.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="tutorial/">Tutorial »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Friday 28 June 2024 08:56">Friday 28 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
diff --git a/dev/tutorial/index.html b/dev/tutorial/index.html
@@ -36,4 +36,4 @@
 prob = ODEProblem(ml, tspan; p = p)
 sol = solve(prob, TRBDF2(), dtmax = 1.0)
 V = map(x -&gt; x[1], sol.u)
-plot(sol.t, V)</code></pre><p><img src="../assets/ten_400.png" alt/></p><p><code>ODEProblem</code> also accepts a <code>u0</code> parameter to change the initial conditions (remember <code>u0 = list_initial_conditions(ml)</code>).</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Friday 21 June 2024 08:56">Friday 21 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot(sol.t, V)</code></pre><p><img src="../assets/ten_400.png" alt/></p><p><code>ODEProblem</code> also accepts a <code>u0</code> parameter to change the initial conditions (remember <code>u0 = list_initial_conditions(ml)</code>).</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Home</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Friday 28 June 2024 08:56">Friday 28 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
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		@@ -1 +1 @@
		{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-06-21T08:57:00","documenter_version":"1.4.1"}}
		{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-06-28T08:56:38","documenter_version":"1.4.1"}}