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Documenter.jl committed Oct 5, 2024
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2 changes: 1 addition & 1 deletion dev/.documenter-siteinfo.json
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@@ -1 +1 @@
{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-10-04T08:55:57","documenter_version":"1.7.0"}}
{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-10-05T14:16:36","documenter_version":"1.7.0"}}
143 changes: 96 additions & 47 deletions dev/assets/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -132,6 +132,18 @@ git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87"
uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b"
version = "0.1.6"

[[deps.BlockArrays]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"]
git-tree-sha1 = "d434647f798823bcae510aee0bc0401927f64391"
uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
version = "1.1.1"

[deps.BlockArrays.extensions]
BlockArraysBandedMatricesExt = "BandedMatrices"

[deps.BlockArrays.weakdeps]
BandedMatrices = "aae01518-5342-5314-be14-df237901396f"

[[deps.CPUSummary]]
deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec"
Expand All @@ -148,7 +160,7 @@ version = "3.4.3"
deps = ["EzXML", "MathML", "Memoize", "ModelingToolkit", "Setfield", "SymbolicUtils"]
path = "/home/runner/work/CellMLToolkit.jl/CellMLToolkit.jl"
uuid = "03cb29e0-1ef4-4721-aa24-cf58a006576f"
version = "2.12.0"
version = "2.13.0"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra"]
Expand Down Expand Up @@ -179,9 +191,9 @@ version = "1.0.2"

[[deps.CommonMark]]
deps = ["Crayons", "JSON", "PrecompileTools", "URIs"]
git-tree-sha1 = "532c4185d3c9037c0237546d817858b23cf9e071"
git-tree-sha1 = "294d62bdb4e1809302f8927abdd0b19464147fb1"
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git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c"
Expand Down Expand Up @@ -234,14 +246,14 @@ uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
version = "0.2.3"

[[deps.ConstructionBase]]
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weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"]

[deps.ConstructionBase.extensions]
ConstructionBaseIntervalSetsExt = "IntervalSets"
ConstructionBaseLinearAlgebraExt = "LinearAlgebra"
ConstructionBaseStaticArraysExt = "StaticArrays"

[[deps.CpuId]]
Expand Down Expand Up @@ -277,9 +289,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[deps.DiffEqBase]]
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git-tree-sha1 = "6b1af0db32958b200b7b1745796432e75821bf48"
git-tree-sha1 = "ada2a9faba0e365dca3cc456b5eca94cf3887ac3"
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[deps.DiffEqBase.extensions]
DiffEqBaseCUDAExt = "CUDA"
Expand Down Expand Up @@ -346,9 +358,9 @@ version = "1.15.1"

[[deps.DifferentiationInterface]]
deps = ["ADTypes", "Compat", "LinearAlgebra", "PackageExtensionCompat"]
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git-tree-sha1 = "7e10eebf52857cd441274f74e3a172cad950437f"
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[deps.DifferentiationInterface.extensions]
DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -384,6 +396,17 @@ version = "0.6.1"
Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

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[deps.DispatchDoctor.extensions]
DispatchDoctorChainRulesCoreExt = "ChainRulesCore"
DispatchDoctorEnzymeCoreExt = "EnzymeCore"

[[deps.Distributed]]
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uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
Expand Down Expand Up @@ -434,16 +457,16 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
version = "1.6.0"

[[deps.DynamicPolynomials]]
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deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"]
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[[deps.DynamicQuantities]]
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git-tree-sha1 = "412b25c7d99ec6b06967d315c7b29bb8e484f092"
deps = ["Compat", "DispatchDoctor", "PackageExtensionCompat", "TestItems", "Tricks"]
git-tree-sha1 = "82b3ab10e1d14cd79d813d30005d52ac3ef9ea97"
uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821"
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[deps.DynamicQuantities.extensions]
DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra"
Expand All @@ -463,9 +486,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
version = "1.0.4"

[[deps.EnzymeCore]]
git-tree-sha1 = "ee11500b17d87b22bc638e9ed8c71a7478c53d61"
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version = "0.8.3"
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weakdeps = ["Adapt"]

[deps.EnzymeCore.extensions]
Expand Down Expand Up @@ -608,9 +631,9 @@ version = "1.3.1"

[[deps.Graphs]]
deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
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[[deps.HostCPUFeatures]]
deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"]
Expand Down Expand Up @@ -640,6 +663,11 @@ git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d"
uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
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[[deps.IntegerMathUtils]]
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[[deps.IntelOpenMP_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e"
Expand Down Expand Up @@ -723,12 +751,6 @@ git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
version = "1.3.1"

[[deps.LabelledArrays]]
deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"]
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version = "1.16.0"

[[deps.LambertW]]
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uuid = "984bce1d-4616-540c-a9ee-88d1112d94c9"
Expand Down Expand Up @@ -926,9 +948,9 @@ version = "0.1.2"

[[deps.MathML]]
deps = ["AbstractTrees", "DocStringExtensions", "EzXML", "IfElse", "SpecialFunctions", "Statistics", "Symbolics"]
git-tree-sha1 = "12b0736d966c45d8621e895671266f05c881dda1"
git-tree-sha1 = "96be2ef58090a043b6da60c9784f80475a52638f"
uuid = "abcecc63-2b08-419c-80c4-c63dca6fa478"
version = "0.1.15"
version = "0.1.16"

[[deps.MaybeInplace]]
deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"]
Expand Down Expand Up @@ -961,18 +983,22 @@ version = "1.2.0"
uuid = "a63ad114-7e13-5084-954f-fe012c677804"

[[deps.ModelingToolkit]]
deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"]
git-tree-sha1 = "9199a56fa74c0d64e0023dc99201f5a602a3890f"
deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"]
git-tree-sha1 = "00140c3b93fbbbd317a71a65c578306d0d72b1be"
uuid = "961ee093-0014-501f-94e3-6117800e7a78"
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[deps.ModelingToolkit.extensions]
MTKBifurcationKitExt = "BifurcationKit"
MTKChainRulesCoreExt = "ChainRulesCore"
MTKDeepDiffsExt = "DeepDiffs"
MTKLabelledArraysExt = "LabelledArrays"

[deps.ModelingToolkit.weakdeps]
BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665"
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6"
LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800"

[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
Expand Down Expand Up @@ -1173,6 +1199,12 @@ git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.4.3"

[[deps.Primes]]
deps = ["IntegerMathUtils"]
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uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae"
version = "0.5.6"

[[deps.Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
Expand Down Expand Up @@ -1310,9 +1342,9 @@ version = "0.6.43"

[[deps.SciMLBase]]
deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
git-tree-sha1 = "71857d6bab17e7ac6802d86ffcc75423b8c1d812"
git-tree-sha1 = "885904799812ed88a607c03b38e9c3a4a5b08853"
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version = "2.55.0"

[deps.SciMLBase.extensions]
SciMLBaseChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -1521,31 +1553,43 @@ version = "0.3.31"

[[deps.SymbolicLimits]]
deps = ["SymbolicUtils"]
git-tree-sha1 = "fb099adbd7504f1e68b4512828e9d94197a8b889"
git-tree-sha1 = "fabf4650afe966a2ba646cabd924c3fd43577fc3"
uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3"
version = "0.2.1"
version = "0.2.2"

[[deps.SymbolicUtils]]
deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"]
git-tree-sha1 = "a7ecd8fb3ee77a47ac033395069117763469c49e"
deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"]
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uuid = "d1185830-fcd6-423d-90d6-eec64667417b"
version = "2.1.3"
version = "3.7.1"

[deps.SymbolicUtils.extensions]
SymbolicUtilsLabelledArraysExt = "LabelledArrays"
SymbolicUtilsReverseDiffExt = "ReverseDiff"

[deps.SymbolicUtils.weakdeps]
LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800"
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"

[[deps.Symbolics]]
deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"]
git-tree-sha1 = "b13a5417865e9934d043718f644e4a67519463ce"
deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"]
git-tree-sha1 = "6a7c7cd9bd8c051877a5a29fb597b18362dbc4e4"
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version = "5.36.0"
version = "6.13.1"

[deps.Symbolics.extensions]
SymbolicsForwardDiffExt = "ForwardDiff"
SymbolicsGroebnerExt = "Groebner"
SymbolicsLuxCoreExt = "LuxCore"
SymbolicsPreallocationToolsExt = "PreallocationTools"
SymbolicsLuxExt = "Lux"
SymbolicsNemoExt = "Nemo"
SymbolicsPreallocationToolsExt = ["PreallocationTools", "ForwardDiff"]
SymbolicsSymPyExt = "SymPy"

[deps.Symbolics.weakdeps]
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
Groebner = "0b43b601-686d-58a3-8a1c-6623616c7cd4"
LuxCore = "bb33d45b-7691-41d6-9220-0943567d0623"
Lux = "b2108857-7c20-44ae-9111-449ecde12c47"
Nemo = "2edaba10-b0f1-5616-af89-8c11ac63239a"
PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46"
SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6"

Expand All @@ -1572,14 +1616,19 @@ uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
version = "1.10.0"

[[deps.TermInterface]]
git-tree-sha1 = "6f0cee95e74d1f6891ba6b35b8b219fd3d11b567"
git-tree-sha1 = "d673e0aca9e46a2f63720201f55cc7b3e7169b16"
uuid = "8ea1fca8-c5ef-4a55-8b96-4e9afe9c9a3c"
version = "0.4.1"
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[[deps.Test]]
deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[deps.TestItems]]
git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb"
uuid = "1c621080-faea-4a02-84b6-bbd5e436b8fe"
version = "1.0.0"

[[deps.ThreadingUtilities]]
deps = ["ManualMemory"]
git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27"
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