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  1. MosaicExplorerJ MosaicExplorerJ Public

    An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets

    ImageJ Macro 12

  2. LOBSTER LOBSTER Public

    Little OBjects Segmentation and Tracking EnviRonment

    MATLAB 9

  3. AutoScanJ AutoScanJ Public

    A suite of ImageJ and Micro-Manager scripts to perform intelligent imaging

    Java 4

  4. deStripe deStripe Public

    This macro implements an image filter meant to mitigate close to parallel attenuation stripes, such as the ones typically observed in (fixed) light sheet microscopy.

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  5. AssistedNuclei3DTracking AssistedNuclei3DTracking Public

    Companion code to the book chapter "Assisted Nuclei 3D Tracking of heterogeneous groups of migrating cells in vivo"

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  6. FFTdeStriper FFTdeStriper Public

    This filter is meant to attenuate parallel, periodic stripes by FFT filtering.

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