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Update github actions
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DonFreed committed Sep 30, 2024
1 parent dce7b5b commit 5281dc4
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -116,7 +116,7 @@ jobs:
"output hifi.vcf.gz"
sentieon driver -r "tests/smoke/r ef.fa" -t 1 --algo GVCFtyper \
-v "output hifi.g.vcf.gz" output_hifi_gvcftyper.vcf.gz
if [ ! -f "output hifi.sv.vcf.gz" -o ! -f "output hifi.haploid.vcf.gz" ]; then
if [ ! -f "output hifi.sv.vcf.gz" ]; then
exit 1
fi
- name: Smoke test - gVCF
Expand Down Expand Up @@ -153,4 +153,4 @@ jobs:
if [ ! -f "output fq.vcf.gz" -o ! -f "output fq_mm2_sorted_fq_0.cram" -o ! -f "output fq.sv.vcf.gz" ]; then
exit 1
fi

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