deploy: aa13d30

_modules/index.html

@@ -77,6 +77,7 @@ <h1>All modules for which code is available</h1>
 <li><a href="pycellga/example/example_mcccga.html">pycellga.example.example_mcccga</a></li>
 <li><a href="pycellga/example/example_sync_cga.html">pycellga.example.example_sync_cga</a></li>
 <li><a href="pycellga/grid.html">pycellga.grid</a></li>
+<li><a href="pycellga/individual.html">pycellga.individual</a></li>
 <li><a href="pycellga/mutation/bit_flip_mutation.html">pycellga.mutation.bit_flip_mutation</a></li>
 <li><a href="pycellga/mutation/byte_mutation.html">pycellga.mutation.byte_mutation</a></li>
 <li><a href="pycellga/mutation/byte_mutation_random.html">pycellga.mutation.byte_mutation_random</a></li>
@@ -92,6 +93,8 @@ <h1>All modules for which code is available</h1>
 <li><a href="pycellga/neighborhoods/compact_9.html">pycellga.neighborhoods.compact_9</a></li>
 <li><a href="pycellga/neighborhoods/linear_5.html">pycellga.neighborhoods.linear_5</a></li>
 <li><a href="pycellga/neighborhoods/linear_9.html">pycellga.neighborhoods.linear_9</a></li>
+<li><a href="pycellga/optimizer.html">pycellga.optimizer</a></li>
+<li><a href="pycellga/population.html">pycellga.population</a></li>
 <li><a href="pycellga/problems/abstract_problem.html">pycellga.problems.abstract_problem</a></li>
 <li><a href="pycellga/problems/single_objective/continuous/ackley.html">pycellga.problems.single_objective.continuous.ackley</a></li>
 <li><a href="pycellga/problems/single_objective/continuous/bentcigar.html">pycellga.problems.single_objective.continuous.bentcigar</a></li>

modules.html

@@ -244,9 +244,68 @@ <h1>pycellga<a class="headerlink" href="#pycellga" title="Link to this heading">
 </li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="pycellga.html#pycellga-individual-module">pycellga.individual module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="pycellga.html#pycellga-optimizer-module">pycellga.optimizer module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="pycellga.html#pycellga-population-module">pycellga.population module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="pycellga.html#module-pycellga.individual">pycellga.individual module</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.individual.GeneType"><code class="docutils literal notranslate"><span class="pre">GeneType</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.GeneType.BINARY"><code class="docutils literal notranslate"><span class="pre">GeneType.BINARY</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.GeneType.PERMUTATION"><code class="docutils literal notranslate"><span class="pre">GeneType.PERMUTATION</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.GeneType.REAL"><code class="docutils literal notranslate"><span class="pre">GeneType.REAL</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual"><code class="docutils literal notranslate"><span class="pre">Individual</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.chromosome"><code class="docutils literal notranslate"><span class="pre">Individual.chromosome</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.fitness_value"><code class="docutils literal notranslate"><span class="pre">Individual.fitness_value</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.position"><code class="docutils literal notranslate"><span class="pre">Individual.position</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.neighbors_positions"><code class="docutils literal notranslate"><span class="pre">Individual.neighbors_positions</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.neighbors"><code class="docutils literal notranslate"><span class="pre">Individual.neighbors</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.gen_type"><code class="docutils literal notranslate"><span class="pre">Individual.gen_type</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.ch_size"><code class="docutils literal notranslate"><span class="pre">Individual.ch_size</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.__init__"><code class="docutils literal notranslate"><span class="pre">Individual.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.generate_candidate"><code class="docutils literal notranslate"><span class="pre">Individual.generate_candidate()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.getneighbors"><code class="docutils literal notranslate"><span class="pre">Individual.getneighbors()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.getneighbors_positions"><code class="docutils literal notranslate"><span class="pre">Individual.getneighbors_positions()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.randomize"><code class="docutils literal notranslate"><span class="pre">Individual.randomize()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.setneighbors"><code class="docutils literal notranslate"><span class="pre">Individual.setneighbors()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.individual.Individual.setneighbors_positions"><code class="docutils literal notranslate"><span class="pre">Individual.setneighbors_positions()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="pycellga.html#module-pycellga.optimizer">pycellga.optimizer module</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.alpha_cga"><code class="docutils literal notranslate"><span class="pre">alpha_cga()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.ccga"><code class="docutils literal notranslate"><span class="pre">ccga()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.cga"><code class="docutils literal notranslate"><span class="pre">cga()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.compete"><code class="docutils literal notranslate"><span class="pre">compete()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.generate_probability_vector"><code class="docutils literal notranslate"><span class="pre">generate_probability_vector()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.mcccga"><code class="docutils literal notranslate"><span class="pre">mcccga()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.random_vector_between"><code class="docutils literal notranslate"><span class="pre">random_vector_between()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.sample"><code class="docutils literal notranslate"><span class="pre">sample()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.sync_cga"><code class="docutils literal notranslate"><span class="pre">sync_cga()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.optimizer.update_vector"><code class="docutils literal notranslate"><span class="pre">update_vector()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="pycellga.html#module-pycellga.population">pycellga.population module</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.population.OptimizationMethod"><code class="docutils literal notranslate"><span class="pre">OptimizationMethod</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.OptimizationMethod.ALPHA_CGA"><code class="docutils literal notranslate"><span class="pre">OptimizationMethod.ALPHA_CGA</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.OptimizationMethod.CCGA"><code class="docutils literal notranslate"><span class="pre">OptimizationMethod.CCGA</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.OptimizationMethod.CGA"><code class="docutils literal notranslate"><span class="pre">OptimizationMethod.CGA</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.OptimizationMethod.MCCCGA"><code class="docutils literal notranslate"><span class="pre">OptimizationMethod.MCCCGA</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.OptimizationMethod.SYNCGA"><code class="docutils literal notranslate"><span class="pre">OptimizationMethod.SYNCGA</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga.population.Population"><code class="docutils literal notranslate"><span class="pre">Population</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.Population.method_name"><code class="docutils literal notranslate"><span class="pre">Population.method_name</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.Population.ch_size"><code class="docutils literal notranslate"><span class="pre">Population.ch_size</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.Population.n_rows"><code class="docutils literal notranslate"><span class="pre">Population.n_rows</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.Population.n_cols"><code class="docutils literal notranslate"><span class="pre">Population.n_cols</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.Population.gen_type"><code class="docutils literal notranslate"><span class="pre">Population.gen_type</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.Population.problem"><code class="docutils literal notranslate"><span class="pre">Population.problem</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.Population.vector"><code class="docutils literal notranslate"><span class="pre">Population.vector</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.Population.__init__"><code class="docutils literal notranslate"><span class="pre">Population.__init__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="pycellga.html#pycellga.population.Population.initial_population"><code class="docutils literal notranslate"><span class="pre">Population.initial_population()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
 <li class="toctree-l2"><a class="reference internal" href="pycellga.html#module-pycellga">Module contents</a></li>
 </ul>
 </li>

py-modindex.html

@@ -129,6 +129,11 @@ <h1>Python Module Index</h1>
        <td>&#160;&#160;&#160;
        <a href="pycellga.html#module-pycellga.grid"><code class="xref">pycellga.grid</code></a></td><td>
        <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="pycellga.html#module-pycellga.individual"><code class="xref">pycellga.individual</code></a></td><td>
+       <em></em></td></tr>
      <tr class="cg-1">
        <td></td>
        <td>&#160;&#160;&#160;
@@ -214,6 +219,16 @@ <h1>Python Module Index</h1>
        <td>&#160;&#160;&#160;
        <a href="pycellga.neighborhoods.html#module-pycellga.neighborhoods.linear_9"><code class="xref">pycellga.neighborhoods.linear_9</code></a></td><td>
        <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="pycellga.html#module-pycellga.optimizer"><code class="xref">pycellga.optimizer</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="pycellga.html#module-pycellga.population"><code class="xref">pycellga.population</code></a></td><td>
+       <em></em></td></tr>
      <tr class="cg-1">
        <td></td>
        <td>&#160;&#160;&#160;

pycellga.example.html

@@ -61,9 +61,9 @@
 <li class="toctree-l3"><a class="reference internal" href="pycellga.html#submodules">Submodules</a></li>
 <li class="toctree-l3"><a class="reference internal" href="pycellga.html#module-pycellga.byte_operators">pycellga.byte_operators module</a></li>
 <li class="toctree-l3"><a class="reference internal" href="pycellga.html#module-pycellga.grid">pycellga.grid module</a></li>
-<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga-individual-module">pycellga.individual module</a></li>
-<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga-optimizer-module">pycellga.optimizer module</a></li>
-<li class="toctree-l3"><a class="reference internal" href="pycellga.html#pycellga-population-module">pycellga.population module</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#module-pycellga.individual">pycellga.individual module</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#module-pycellga.optimizer">pycellga.optimizer module</a></li>
+<li class="toctree-l3"><a class="reference internal" href="pycellga.html#module-pycellga.population">pycellga.population module</a></li>
 <li class="toctree-l3"><a class="reference internal" href="pycellga.html#module-pycellga">Module contents</a></li>
 </ul>
 </li>