update version; prepare to release 1.1.2

README.md

@@ -9,7 +9,7 @@ The development of Scallop2 has been based on the [Scallop](https://github.com/K
 Scallop2 can be easily installed with conda: [![Anaconda-Server Badge](https://anaconda.org/bioconda/scallop2/badges/installer/conda.svg)](https://anaconda.org/bioconda/scallop2)
 
 Install from source code: download the source code of Scallop2 from
-[here](https://github.com/Shao-Group/scallop2/releases/download/v1.1.1/scallop2-1.1.1.tar.gz).
+[here](https://github.com/Shao-Group/scallop2/releases/download/v1.1.2/scallop2-1.1.2.tar.gz).
 Scallop2 uses additional libraries of Boost and htslib. 
 If they have not been installed in your system, you first
 need to download and install them. You might also need to

configure.ac

@@ -0,0 +1 @@
+configure.linux.ac

configure.bioconda.ac

@@ -2,7 +2,7 @@
 # Process this file with autoconf to produce a configure script.
 
 AC_PREREQ([2.63])
-AC_INIT(scallop2, 1.1.1, [email protected])
+AC_INIT(scallop2, 1.1.2, [email protected])
 AM_INIT_AUTOMAKE()
 AC_CONFIG_SRCDIR([src/main.cc])
 AC_CONFIG_HEADERS([config.h])

configure.linux.ac

@@ -2,7 +2,7 @@
 # Process this file with autoconf to produce a configure script.
 
 AC_PREREQ([2.63])
-AC_INIT(scallop2, 1.1.1, [email protected])
+AC_INIT(scallop2, 1.1.2, [email protected])
 AM_INIT_AUTOMAKE()
 AC_CONFIG_SRCDIR([src/main.cc])
 AC_CONFIG_HEADERS([config.h])

configure.mac.ac

@@ -2,7 +2,7 @@
 # Process this file with autoconf to produce a configure script.
 
 AC_PREREQ([2.69])
-AC_INIT(scallop2, 1.1.1, [email protected])
+AC_INIT(scallop2, 1.1.2, [email protected])
 AM_INIT_AUTOMAKE()
 AC_CONFIG_SRCDIR([src/main.cc])
 AC_CONFIG_HEADERS([config.h])

src/config.cc

@@ -103,7 +103,7 @@ string fixed_gene_name = "";
 int batch_bundle_size = 100;
 int verbose = 1;
 int assemble_duplicates = 10;
-string version = "v1.1.1";
+string version = "v1.1.2";
 
 int parse_arguments(int argc, const char ** argv)
 {