This package has been developed to evaluate cellular engineering processes for direct differentiation of stem cells or conversion (transdifferentiation) of somatic cells to primary cells based on high throughput gene expression data screened either by DNA microarray or RNA sequencing.
https://github.com/Sharonxiaoyuan/eegc/blob/master/inst/doc/eegc.pdf
Zhou, X., et.al. (2017). Systemic evaluation of cellular reprogramming processes exploiting a novel R-tool: eegc. Bioinformatics doi:10.1093/bioinformatics/btx205.