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On the lookout for new adventures
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On the lookout for new adventures
  • School of Pharmacy, University of Wisconsin-Madison
  • Madison, WI
  • 04:12 - 5h behind
  • X @SiddUppal
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Increasingly complete example bioinformatics workflow

Python 18 4 Updated Oct 19, 2022

Snakemake pipeline for basic processing of metagenomic data from the lab

Python 5 7 Updated Jan 30, 2025

Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes

Jupyter Notebook 16 Updated Feb 26, 2020

A comprehensive library for computational molecular biology

Python 750 106 Updated Mar 8, 2025
Python 17 1 Updated Apr 22, 2024

Hone computational biology skills by re-enacting Figure 1 of modern biology papers

Jupyter Notebook 217 48 Updated Jul 25, 2024

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

Jupyter Notebook 390 46 Updated Mar 7, 2025
Python 47 5 Updated Mar 10, 2024

Super simple build framework with fast, repeatable builds and an instantly familiar syntax – like Dockerfile and Makefile had a baby.

Go 11,643 409 Updated Sep 13, 2024

πŸ“Š The official Python implementation of the ColinTalksCrypto Bitcoin Bull Run Index (CBBI)

Python 169 50 Updated Nov 12, 2024

Easily add significance brackets to your ggplots

R 601 43 Updated Aug 11, 2024

A simple command-line tool to download data from Joint Genome Institute databases

Python 50 17 Updated Jan 19, 2023

Bioinformatics Tools

Python 85 12 Updated Mar 7, 2025

A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.

Python 10 2 Updated Apr 25, 2024

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

Python 61 6 Updated Sep 14, 2024

A grammar of graphics for comparative genomics

R 651 65 Updated Jan 31, 2025

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Python 832 50 Updated Jan 25, 2025

A genome visualization python package for comparative genomics

Python 312 22 Updated Jan 11, 2025

A list of interesting genome browser and genome visualization programs

TypeScript 914 114 Updated Mar 4, 2025

Efficient phylogenetic clustering of viral sequences

Python 81 10 Updated Mar 12, 2024

MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.

Shell 88 9 Updated Aug 13, 2024

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

Python 86 11 Updated Jun 25, 2023

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Python 377 44 Updated Dec 1, 2023

Bitcoin Core integration/staging tree

C++ 82,397 36,892 Updated Mar 8, 2025
R 40 4 Updated Jul 31, 2024

A curated list of the hottest and most fresh resources to become an EVM chad

332 34 Updated May 22, 2023

πŸ”Ž πŸ’Š Mass screening of contigs for antimicrobial and virulence genes

Perl 391 95 Updated Dec 31, 2023

⚠️ The Truffle Suite is being sunset. For information on ongoing support, migration options and FAQs, visit the Consensys blog. Thank you for all the support over the years.

TypeScript 2,632 684 Updated Jan 29, 2024

Ultimate Solidity, Blockchain, and Smart Contract - Beginner to Expert Full Course | Python Edition

10,935 2,944 Updated Apr 16, 2024
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