Merge pull request #193 from jhlegarreta/FixImportFormatting

STYLE: Fix import formatting
SlicerDMRI · Oct 21, 2023 · 4c93d41 · 4c93d41
2 parents 3bd5f04 + 781a311
commit 4c93d41
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Showing 7 changed files with 19 additions and 42 deletions.
diff --git a/.github/workflows/check_format.yml → .github/workflows/check_format.yaml b/.github/workflows/check_format.yml → .github/workflows/check_format.yaml
diff --git a/README.md b/README.md
@@ -3,6 +3,7 @@ whitematteranalysis
 
 [![test, package](https://github.com/SlicerDMRI/whitematteranalysis/actions/workflows/test_package.yaml/badge.svg?branch=master)](https://github.com/SlicerDMRI/whitematteranalysis/actions/workflows/test_package.yaml?query=branch%3Amaster)
 [![Documentation Status](https://readthedocs.org/projects/whitematteranalysis/badge/?version=latest)](https://whitematteranalysis.readthedocs.io/en/latest/?badge=latest)
+[![code format](https://github.com/SlicerDMRI/whitematteranalysis/actions/workflows/check_format.yml/badge.svg?branch=master)](https://github.com/SlicerDMRI/whitematteranalysis/actions/workflows/check_format.yml?query=branch%3Amaster)
 [![Imports: isort](https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336)](https://pycqa.github.io/isort/)
 
 

diff --git a/bin/wm_append_clusters_to_anatomical_tracts.py b/bin/wm_append_clusters_to_anatomical_tracts.py
@@ -5,22 +5,15 @@
 import glob
 import os
 
+import pandas as pd
 import vtk
 
 import whitematteranalysis as wma
-import pandas as pd
-
-from whitematteranalysis.data.atlas.utils import (
-    ORGAtlasVersion,
-    get_local_atlas_bundle_fname,
-)
 from whitematteranalysis.anatomy.org_atlas_utils import (
-    ORGAtlasBundleFileHeading,
-    get_hemispheric_mono_bundles,
-    get_commissural_augmented_bundles,
-    add_org_atlas_prefix,
-    get_bundle_short_name,
-)
+    ORGAtlasBundleFileHeading, add_org_atlas_prefix, get_bundle_short_name,
+    get_commissural_augmented_bundles, get_hemispheric_mono_bundles)
+from whitematteranalysis.data.atlas.utils import (ORGAtlasVersion,
+                                                  get_local_atlas_bundle_fname)
 
 
 def get_hemispheric_mono_bundle_names(_df):

diff --git a/utilities/wm_query_atlas_bundles_names.py b/utilities/wm_query_atlas_bundles_names.py
@@ -17,10 +17,8 @@
 import argparse
 from pathlib import Path
 
-from whitematteranalysis.anatomy.org_atlas_utils import (
-    AtlasAvailability,
-    query_bundle_names,
-)
+from whitematteranalysis.anatomy.org_atlas_utils import (AtlasAvailability,
+                                                         query_bundle_names)
 from whitematteranalysis.fileio.utils import save2txt
 
 

diff --git a/whitematteranalysis/anatomy/org_atlas_utils.py b/whitematteranalysis/anatomy/org_atlas_utils.py
@@ -4,11 +4,8 @@
 
 import pandas as pd
 
-from whitematteranalysis.fileio.utils import (
-    SlicerFileExtension,
-    VTKFileExtension,
-    find_filenames,
-)
+from whitematteranalysis.fileio.utils import (SlicerFileExtension,
+                                              VTKFileExtension, find_filenames)
 
 atlas_bundle_file_prefix = "T_"
 nonatlas_bundle_names = ["T_FalsePositive"]

diff --git a/whitematteranalysis/anatomy/tests/test_org_atlas_utils.py b/whitematteranalysis/anatomy/tests/test_org_atlas_utils.py
@@ -4,23 +4,13 @@
 import pandas as pd
 
 from whitematteranalysis.anatomy.org_atlas_utils import (
-    ORGAtlasBundleFileHeading,
-    get_association_bundles,
-    get_bundle_long_name,
-    get_bundle_short_name,
-    get_cerebellar_bundles,
-    get_commissural_bundles,
-    get_commissural_augmented_bundles,
-    get_hemispheric_bundles,
-    get_hemispheric_mono_bundles,
-    get_striatal_bundles,
-    get_projection_bundles,
-    get_superficial_bundles,
-)
-from whitematteranalysis.data.atlas.utils import (
-    ORGAtlasVersion,
-    get_local_atlas_bundle_fname,
-)
+    ORGAtlasBundleFileHeading, get_association_bundles, get_bundle_long_name,
+    get_bundle_short_name, get_cerebellar_bundles,
+    get_commissural_augmented_bundles, get_commissural_bundles,
+    get_hemispheric_bundles, get_hemispheric_mono_bundles,
+    get_projection_bundles, get_striatal_bundles, get_superficial_bundles)
+from whitematteranalysis.data.atlas.utils import (ORGAtlasVersion,
+                                                  get_local_atlas_bundle_fname)
 
 
 def _check_bundle_count(method_name, expected_bndl_count):

diff --git a/whitematteranalysis/data/atlas/tests/test_utils.py b/whitematteranalysis/data/atlas/tests/test_utils.py
@@ -3,10 +3,8 @@
 
 import os
 
-from whitematteranalysis.data.atlas.utils import (
-    ORGAtlasVersion,
-    get_local_atlas_bundle_fname,
-)
+from whitematteranalysis.data.atlas.utils import (ORGAtlasVersion,
+                                                  get_local_atlas_bundle_fname)
 
 
 def test_get_local_atlas_bundle_fname():