BUG: Fix WM diffusion measurement Python script call for Linux #156
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jhlegarreta
commented
Sep 19, 2023
jhlegarreta
commented
- ENH: Add executable flag to ORG atlas application script
- BUG: Fix WM diffusion measurement Python script call for Linux
Add executable flag to ORG atlas application script: change permissions from `100644` to `100755`.
Fix the WM diffusion measurement Python script call in the ORG atlas application shell script for Linux. As described in https://discourse.slicer.org/t/no-csv-file-in-diffusionmessurements-folder-in-wma/28439 the solution for Linux requires providing the Python script with the path to the 3D Slicer executable together with the `--launch` option and the path to the tract measurement 3D Slicer CLI executable as the last positional argument.
jhlegarreta
commented
Sep 19, 2023
| else | ||
| measurement_cli_cmd=$FiberTractMeasurementsCLI | ||
| fi | ||
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| echo "<wm_apply_ORG_atlas_to_subject> Report diffusion measurements of fiber clusters." |
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The indentation here has used a tab instead of whitespaces, hence the difference with the newly added code.
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Checked locally on Linux, fixes the issue. |
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