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VOR related models and provenance#1152

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andrewgait wants to merge 159 commits intomasterSpiNNakerManchester/sPyNNaker:masterfrom icub_vor_updateSpiNNakerManchester/sPyNNaker:icub_vor_updateCopy head branch name to clipboard

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Commits on Oct 8, 2018

• changes to compile code on Chiara's MAC

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Commits on Oct 9, 2018

• Sketched out cerebellum neuron model and plasticity update

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Commits on Oct 10, 2018

• add logging to timing initialisation

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• Add potentiation on PF spike

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• added look up table for PFPC learning rule

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• Configure to use exp_sin_lookup

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• add back dt printing

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• add missing variable initialisation

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• Sorry Chiara - this extra variable misaligned things!

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• Add logging of exp_sin table lookup

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• Tweak logging and reading of exp_sin_lut

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Commits on Oct 11, 2018

• added prints

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• Merge branch 'icub_vor' of

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• Implemented depression for single spike cases

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• It works!!

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Commits on Oct 12, 2018

• add template code for vn neurons

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Commits on Dec 10, 2018

• Merge remote-tracking branch 'origin/master' into icub_vor

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• Update to separate synapse dynamics for cerebellum neurons

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Commits on Dec 11, 2018

• Add template code for Mossy-Fibre/Vestibular Nuclei plasticity

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• Correct naming mismatch

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• Tidy PFPC LUT generation

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• Add MFVN LUT generation and configuration code

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• Add mossy fibre plasticity

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Commits on Dec 12, 2018

• Add forward processing of mfvn spikes

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• Bubble down kernel/plasticity config params

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• Simplify PFPC LUT generation

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Commits on Feb 6, 2019

• Updates to logging for testing in real network

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Commits on Apr 29, 2019

• Merge remote-tracking branch 'origin/master' into icub_vor

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• run forever working and correct addresses as output

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Commits on Aug 29, 2019

• Merge remote-tracking branch 'origin/master' into icub_vor

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Commits on Sep 1, 2019

• Merge master and bring up to date

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Commits on Sep 6, 2019

• Get models working inside cerebellum_tb.py (reduced to 128 neurons per

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• Check under python 2

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Commits on Jan 22, 2020

• make poisson source able to change rate without re-map

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Commits on Sep 1, 2020

• Merge branch 'master' into icub_vor_OR_dev

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Commits on Sep 2, 2020

• master merged in and tested

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• removing some unnecessary log infos

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Commits on Nov 11, 2020

• Merge branch 'master' into icub_vor_OR_dev

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Commits on Dec 8, 2020

• can set custom RB LS once again

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Commits on Dec 9, 2020

• removed del from dict. now can pass same dict to multiple pops

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• better saving of figures and returning of variables from plasticity common

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Commits on Dec 10, 2020

• correct use of LUTs using old-style functions

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Commits on Dec 14, 2020

• longer running example of cerebellum + spinngym. more optimisations and checks to come

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Commits on Dec 16, 2020

• resolving weird behaviour with RandomDelays and FromListconnector

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Commits on Jan 15, 2021

• added ability to scale the kernels via the alpha parameter

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Commits on Jan 18, 2021

• [PF-PC and MF-VN] added ability to scale LUT kernels

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Commits on Feb 22, 2021

• no TDMA or tx_offset. Everything is as fast as possible

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• Neuron, then synapse with disabled IRQs

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• no flushing of spikes

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• added SpiNNCer-style custom provenance gathering

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• added code for spike flushing, but not doing any flushing in this state

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Commits on Mar 5, 2021

• going back to irq disable. int disabling would also disable fiqs

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Commits on Nov 15, 2021

• Merge remote-tracking branch 'origin/master' into icub_vor_update

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Commits on Nov 18, 2021

• Merge correctly and make MFVN and PFPC STDP (single-neuron) models work

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• Tidy up C code (vera)

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• more tidying (vera)

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• Add pandas to requirements here too?

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• unused parameter

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• flake8 various

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Commits on Nov 19, 2021

• pylint various

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• Add copyright statements to new files

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Commits on Nov 23, 2021

• Reinstate user-specified ring buffer left shifts

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Commits on Nov 24, 2021

• Turn off plasticity printing

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• Add rb_left_shifts argument in tests

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• Missed adding rb_left_shifts in this vertex

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Commits on Nov 25, 2021

• Move to use spynnaker rather than spynnaker8 locations for imports

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Commits on Nov 29, 2021

• Don't need pandas any more

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• Fix to make packets-per-timestep recording work again; move provenance

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• Repeat after me: "the order in Python must be the same as in C"

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Commits on Jan 20, 2022

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Commits on Feb 4, 2022

• Merge remote-tracking branch 'origin/master' into icub_vor_update

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• Reinstate all binaries; remove model-specific hacking

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Commits on Feb 10, 2022

• Actually use the neuron model that includes t_last

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• Put the flushed spikes counters under debug flags

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• Spike flushing only in debug mode

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• Tidy up and add some documentation

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Commits on Feb 11, 2022

• Turn tdma back on again

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• More tidying up of python code this time

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Commits on Feb 25, 2022

• Merge remote-tracking branch 'origin/master' into icub_vor_update

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• Remove unused old structural plasticity code

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• No extra fields in this set of provenance any more

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• remove unnecessary SSP changes

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Commits on Mar 2, 2022

• Add reference to paper for MF-VN and PF-PC implementation

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Commits on Mar 11, 2022

• Merge branch 'master' into icub_vor_update

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• Add current source argument to state update; reduce large binaries

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• Move models to correct location

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• missed in merge

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• reduce binary size

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• If SSP is being controlled from another vertex then add control edge

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Commits on Aug 3, 2022

• circular_buffer size is 2^n-1, not 2^n; also modify while condition

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• Match changes

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• Try to fit standard builds into ITCM

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• Use a current source impl that exists..

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• No argument required here

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• merge properly - no more constraints

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• Missed an argument

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• Update neuron model to match others

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• Match changes elsewhere, fix builds and runs for new plasticity rules

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• pylint, vera

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• Move new provenance to split models only

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• vera remove empty line

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• pylint is now more strict

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• Provenance not under debug; make STDP naming more consistent

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• Update licenses

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• DataType has moved

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• Remove unneeded print statements

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• Tidy up C code

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• Tidy up python code

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• Better match changes in standard STDP dynamics code

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• Setting delay_dendritic to zero is unnecessary

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