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Ok so I think I've done it, except its a little bit janky. i.e. in order to get the height consistent and correct, instead of editing the dangerouslyPastedHTML I've just set the overflow: hidden, and set the height of the contents div to be one which generally doesn't seem to clip words.
also, @melissasamworth I made a design decision to put the reference popup below the number (instead of above, which is on the figma), because I feel like it generally clips off less often because I notice I am more likely to be reading stuff at the top of the screen. I also like that the curser is closer to the title and link when its below. Anywho, I can change it if you disagree.
bla.mov