EpiVisR: A Tool for Exploratory Data Analysis and Visualisation within Epigenome Wide Methylation Analyses (EWAS)
EpiVisR is a tool for visualisation of differentially methylated probes (DMP).
The EpiVisR package is designed to visualize results from EWAS analyses. It supports the user by providing
- Manhattan and volcano plots for CpG selection;
- Trait Methylation plots;
- Methylation profile plots and
- Correlation plots.
library('remotes')
install_github('SteRoe/EpiVisR')
Point your working directory to the location with your files to visualize. This folder should also contain a valid yml-file with all necessary settings for
betaFileName
traitFileName
genderFileName
dataDir
EWAScatalogFileName
baseURL_EWASDataHub
baseURL_MRCEWASCatalog
probeAttribut
mergeAttribut
genderAttribut
genderFemaleValue
genderMaleValue
An example is given in the ./inst/extdata/ folder.
Detailed explanations of data structures are in the vignette.
setwd("your.working.directory")
Start the App using: EpiVisR::EpiVisRApp()