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New JOSS paper draft #829

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matteobachetti
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This PR adds a new paper we are submitting to JOSS. We had already a publication in 2019, and in this paper we describe all the improvements of the code in the last 5 years.
The paper is in paper2.md, the bibliography in joss2.bib

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codecov bot commented Jul 4, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 96.53%. Comparing base (241f81a) to head (4315908).

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@matteobachetti
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Hello @abigailStev @jdswinbank @mgullik @matteolucchini1 @eleonorav89 @theand9 @Gaurav17Joshi @pupperemeritus @francescodoan @swapsha96 @mihirtripathi97 @dhruv9vats
This paper describes the work done since the first JOSS paper in 2019. You are listed as co-authors because you have given major contributions that are explicitly listed in the manuscript.
We need each of you to accept or decline explicitly the co-authorship, and give your affiliation and (if any) your OrcID number. And of course, feel free to comment on the manuscript!
Thanks in advance!

@eleonorav89
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Very nice job! Thank you @matteobachetti for including me :)

@pupperemeritus
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Thank you @matteobachetti. I'd love to be a coauthor. 0009-0006-3745-5553 is my OrcID.

@matteolucchini1
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Hi @matteobachetti , I would be very happy to be a co-author, thanks for including me!

My current affiliation is "Anton Pannekoek Institute, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands" and my OrcID is 0000-0002-2235-3347. Do you have a deadline for when you would like comments? I will be very busy the next two weeks, but I might find some time after COSPAR.

@francescodoan
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Hello everyone!
Thank you @matteobachetti for including me in the coauthor list!

My Orcid: 0000-0003-0799-5760
My current affiliation is LIPN-Université Sorbonne Paris Nord.

Let me know if there is anything else I can do!

@Gaurav17Joshi
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Thanks for the invite.I would be very happy to be a co-author. I am at Indian Institute of Technology Gandhinagar, and my ORCID ID is 0009-0009-2305-5008.

@matteobachetti
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Thank you @matteobachetti. I'd love to be a coauthor. 0009-0006-3745-5553 is my OrcID.

what is your affiliation @pupperemeritus ?

@pupperemeritus
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It's Chaitanya Bharathi Institute of Technology, Hyderabad,India.

@dhruv9vats
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Thank you for the consideration!
I'd be more than happy to be a co-author @matteobachetti.

My current affiliation: Voltron Data, US, worldwide remote
My OrcID: 0009-0001-0542-0755

@mihirtripathi97
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Hi @matteobachetti, Thank you for including me! I would love to be a co-author.

My current affiliation: Academia Sinica Institute of Astronomy & Astrophysics 11F of Astronomy-Mathematics Building, AS/NTU, No. 1, Section 4, Roosevelt Road, Taipei 10617, Taiwan, R.O.C.

My ORCID: 0009-0007-2723-0315

@swapsha96
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Thanks, @matteobachetti. I accept the co-authorship. My affiliation is "Indian Institute of Technology, Mandi".

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@mgullik mgullik left a comment

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Hi @matteobachetti,
thanks for including me in this paper, I accept to be a co-author.
I left a few comments directly on the text.

joss/paper2.md Show resolved Hide resolved
joss/paper2.md Show resolved Hide resolved
joss/paper2.md Outdated
Recovery and Resilience Plan (NRRP) - Mission 4 Component 2 within the activities of Spoke 3
(Astrophysics and Cosmos Observations)
D.H. is supported by the Women In Science Excel (WISE) programme of the Netherlands Organisation for Scientific Research (NWO).

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If I may add my acknowledgments (it's not strictly necessary though )
G.M. acknowledges financial support from the European Union’s Horizon Europe research and innovation programme under the Marie Sk\l{}odowska-Curie grant agreement No. 101107057

joss/paper2.md Outdated

We introduced a wide range of new techniques particularly designed to analyse unevenly sampled data sets, responding to the growing need for these techniques with the advent of large-scale astronomical time domain surveys, subject to irregular observing constraints. Methods include Gaussian Process modeling of quasi-periodic oscillations [hubner] and Lomb-Scargle cross spectra [scargle]. We have introduced the Fourier-Domain Acceleration Search [ransom] for pulsars; the H-test [dejager] and Phase Dispersion Minimization [stellingwerf] statistics were also introduced into the pulsar sub package to evaluate the folded profiles of pulsars. We expanded the statistical capabilities of Stingray by introducing a number of statistical evaluation functions to estimate the statistics of periodograms, with particular attention to the upper limits on variable power.

Finally, we have added a number of high-level exploratory and diagnostic functionality specifically as an essential toolbox to characterize accreting compact objects during their outbursts: standard measures such as color-color and hardness-intensity diagrams, and their equivalent diagnostics in the frequency domain, "power colors" [@powercolors].
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"standard measures" -> "standard products"

@theand9
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theand9 commented Jul 8, 2024

@matteobachetti Thank you so much for including me and recognizing my contributions!

ORCID: 0000-0002-6015-9553
Current Affiliation: Carnegie Mellon University

@matteobachetti
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matteobachetti commented Sep 9, 2024

Comments from @masonng-astro :

  • Consistency between using “modelling” and “modeling”, except for the reference to the subpackage
  • “analyse” was written in the text instead of “analyze” (I assume the authors are adopting US English spelling throughout)
  • The hyperlinks to “our benchmarks” and “Lightkurve” point to wrong locations
  • I believe the authors will be adding the references before final approval

Ref: pyOpenSci/software-submission#201 (comment)

@matteobachetti
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@JohannesBuchner I just realized that you should also be in this paper ;)
Could you confirm and give me your affiliation and ORCID?

@JohannesBuchner
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JohannesBuchner commented Sep 10, 2024

OK :)

0000-0003-0426-6634

Max Planck Institute for Extraterrestrial Physics, Giessenbachstrasse, 85741 Garching, Germany

no acks necessary

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