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| { | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "$id": "https://hexcalc.ucsc.edu:9000/", | ||
| "description": "Relevant metadata for a cluster solution executed on single cell mRNA seq data.", | ||
| "type": "object", | ||
| "additionalProperties": false, | ||
| "required": [ | ||
| "name", | ||
| "clusters" | ||
| ], | ||
| "properties": { | ||
| "name": { | ||
| "description": "Name of the cluster solution given by the analyst.", | ||
| "type": "string" | ||
| }, | ||
| "method": { | ||
| "description": "Name of the method used to create cluster solution given by the analyst.", | ||
| "type": "string" | ||
| }, | ||
| "method_url": { | ||
| "description": "Url to documentation of the method used to create cluster solution.", | ||
| "type": "string" | ||
| }, | ||
| "analyst": { | ||
| "description": "User name attached to cluster solution submission.", | ||
| "type": "string" | ||
| }, | ||
| "dataset_id": { | ||
| "description": "Dataset identifier.", | ||
| "type": "string" | ||
| }, | ||
| "na_count": { | ||
| "description": "The number of cells that are contained in the dataset but not assigned to a cluster.", | ||
| "type": "number" | ||
| }, | ||
| "clusters": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "additionalProperties": false, | ||
| "required": [ | ||
| "name", | ||
| "cell_count", | ||
| "cells" | ||
| ], | ||
| "properties": { | ||
| "label": { | ||
| "description": "The label used to identify a cluster.", | ||
| "type": "string" | ||
| }, | ||
| "cell_count": { | ||
| "description": "The number of cells in the cluster.", | ||
| "type": "number" | ||
| }, | ||
| "cells": { | ||
| "description": "Cells belonging to the cluster.", | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "properties": { | ||
| "id": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "id" | ||
| ] | ||
| } | ||
| }, | ||
| "markers": { | ||
| "description": "Cells belonging to the cluster.", | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "required": [ | ||
| "symbol", | ||
| "metrics", | ||
| "values" | ||
| ], | ||
| "properties": { | ||
| "symbol": { | ||
| "type": "string", | ||
| "description": "Hugo gene identifier." | ||
| }, | ||
| "metrics": { | ||
| "type": "array", | ||
| "minItems": 1, | ||
| "items": { | ||
| "type": "string" | ||
| }, | ||
| "description": "Names of the metrics calculated for the gene marker, parallel with the values array." | ||
| }, | ||
| "values": { | ||
| "type": "array", | ||
| "minItems": 1, | ||
| "items": { | ||
| "type": "number" | ||
| }, | ||
| "description": "Values of the metrics calculated for the gene marker, parallel with the metrics array." | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |