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@SwissOpenEM

OpenEM

The Swiss Open Electron Microscopy Data Network

Summary

The OpenEM Data Network is a consortium of Swiss electron microscopy facilities working together to:

  • Improve Open Research Data (ORD) practices in the Swiss EM community
  • Provide an open and FAIR repository for Swiss EM data not hosted elsewhere
  • Standardize EM metadata & automate collection at Swiss EM facilities
  • Follow a consistent data lifecycle when collecting data at different facilities
  • Streamline publication of EM data into open repositories like EMPIAR, EMDB, and the PDB

OpenEM will target both researchers producing EM data and consumers of open data for additional science. Data producers benefit from more streamlined data collection, standardized facilities, easier deposition for publication, and adherence to data management policies. The wider availability of open EM data brings numerous benefits, including reproducing results, applying new techniques to old data, training AI & other new methods, and mining data for new insights.

Partners & Collaborations

collaborations

Funding

OpenEM is a Swiss Open Research Data Grants (CHORD) project funded by ETH and swissuniversities.

Pinned Loading

  1. MS_Metadata_reader MS_Metadata_reader Public

    A collection of Python scripts that extract metadata from EM data for Materials Science.

    Python

  2. ScopeMArchiver ScopeMArchiver Public

    Python

  3. LS_Metadata_reader LS_Metadata_reader Public

    Roff

  4. globus globus Public

    Library for requesting globus transfers

    Go

  5. Ingestor Ingestor Public

    OpenEM Data Network Ingestor service and app

    Go 1

Repositories

Showing 10 of 17 repositories
  • scicat-frontend Public Forked from SciCatProject/frontend

    SciCat open data catalogue web client

    SwissOpenEM/scicat-frontend’s past year of commit activity
    TypeScript 0 BSD-3-Clause 33 0 0 Updated May 13, 2025
  • SwissOpenEM/ScopeMArchiver’s past year of commit activity
    Python 0 0 34 1 Updated May 13, 2025
  • Ingestor Public

    OpenEM Data Network Ingestor service and app

    SwissOpenEM/Ingestor’s past year of commit activity
    Go 0 1 23 5 Updated May 13, 2025
  • SwissOpenEM/keycloak-admin-helper-plugin’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated May 13, 2025
  • SwissOpenEM/epu_dataset_merger’s past year of commit activity
    DM 0 BSD-3-Clause 0 0 0 Updated May 12, 2025
  • globus-transfer-service Public

    This is a service that allows for requesting Globus transfers using Scicat tokens

    SwissOpenEM/globus-transfer-service’s past year of commit activity
    Go 0 BSD-3-Clause 0 0 0 Updated May 12, 2025
  • SwissOpenEM/LS_Metadata_reader’s past year of commit activity
    Roff 0 BSD-3-Clause 0 3 1 Updated May 9, 2025
  • MS_Metadata_reader Public

    A collection of Python scripts that extract metadata from EM data for Materials Science.

    SwissOpenEM/MS_Metadata_reader’s past year of commit activity
    Python 0 0 6 0 Updated May 6, 2025
  • Depositor Public

    An interface to direct files and metadata from SciCat to OneDep

    SwissOpenEM/Depositor’s past year of commit activity
    Go 0 0 8 0 Updated May 1, 2025
  • openem-deployment Public

    Deployment of the OpenEM Ingestor stack with Docker compose

    SwissOpenEM/openem-deployment’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Apr 23, 2025

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