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SBOL Utilities 1.0-alpha10

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@jakebeal jakebeal released this 30 Sep 15:45
· 388 commits to main since this release
1.0a10
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Early release of SBOL Utilities with four utilities:

  • graph-sbol uses graphviz to render the object tree in an SBOL Document.
  • excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
  • sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
  • sbol-calculate-sequences attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.

In addition, for python users SBOL Utilities provides sequence and component packages to simplify common tasks with those types of objects.

New this release:

  • Compatibility for python 3.7 forward
  • New sequence and component packages with higher level functions for working with those types of objects
  • Migration of many helper_functions into sequence and workarounds packages not backward compatible
  • Fix an excel-to-sbol bug with sequence identities
  • Unpin required pySBOL3 version
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