fix: GPR curation for transport reactions (8)

SysBioChalmers · Dec 31, 2024 · 5948d30 · 5948d30
1 parent 008b443
commit 5948d30
Showing 1 changed file with 23 additions and 38 deletions.
diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml
@@ -154978,7 +154978,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -154995,7 +154995,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155267,7 +155267,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902"
+      - gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155301,7 +155301,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155335,7 +155335,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155352,7 +155352,7 @@
           - MAM03101e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155403,7 +155403,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155420,7 +155420,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281"
+      - gene_reaction_rule: "ENSG00000105281"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155437,7 +155437,7 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155454,7 +155454,7 @@
           - MAM02993e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902"
+      - gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155471,7 +155471,7 @@
           - MAM02896e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155522,7 +155522,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155590,7 +155590,7 @@
           - MAM02724e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155641,7 +155641,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155658,7 +155658,7 @@
           - MAM02770e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155692,7 +155692,7 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155726,7 +155726,7 @@
           - MAM02519e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155828,7 +155828,7 @@
           - MAM03089e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155845,7 +155845,7 @@
           - MAM03089e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155862,7 +155862,7 @@
           - MAM03101e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155930,7 +155930,7 @@
           - MAM03089e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -155964,7 +155964,7 @@
           - MAM03089e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000103257"
+      - gene_reaction_rule: "ENSG00000103257"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156066,7 +156066,6 @@
           - MAM02896e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156083,7 +156082,6 @@
           - MAM02724e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156202,7 +156200,6 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156219,7 +156216,6 @@
           - MAM02993e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156270,7 +156266,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156287,7 +156282,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156355,7 +156349,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156406,7 +156399,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156423,7 +156415,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156457,7 +156448,6 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156474,7 +156464,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156491,7 +156480,6 @@
           - MAM03101e: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156627,7 +156615,6 @@
           - MAM02724e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156644,7 +156631,6 @@
           - MAM03101e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156712,7 +156698,6 @@
           - MAM03135e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem:
@@ -156729,7 +156714,7 @@
           - MAM02993e: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000103064 or ENSG00000105281 or ENSG00000115902 or ENSG00000151012"
+      - gene_reaction_rule: "ENSG00000105281 or ENSG00000115902"
       - rxnFrom: "HMRdatabase"
       - references: "PMID:14770309;PMID:14770310"
       - subsystem: